UHGV-1380920 (vOTU-074818)

Viral Genome: UHGV-1380920

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1380920
vOTU ID	vOTU-074818
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0275286
Associated BioSample	SAMN00791996
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.63 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9792
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.19
Jumbo phage	No

Genome content
Genome length (bp)	41,286
GC content	37.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	89%
Average CDS length (bps)	527.23
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1380920_1	phrog_9589	105.0	6.4e-32	endolysin	lysis
UniRef90	UHGV-1380920_1	UniRef90_A0A173TVL9	499.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1380920_1	1123075.AUDP01000020_gene1533	228.0	0	pathogenesis	N/A
Pfam	UHGV-1380920_1	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1380920_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1380920_1	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-1380920_1	PF01471,PF06940,TIGR02594,NF038080,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_2	phrog_962	76.9	2.6e-22	holin	lysis
UniRef90	UHGV-1380920_2	UniRef90_UPI001BA7CE6E	150.0	1.4013e-45	phage holin	N/A
eggNOG-mapper	UHGV-1380920_2	1120998.AUFC01000022_gene406	91.7	2.97e-23	Bacteriophage holin	N/A
Pfam	UHGV-1380920_2	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1380920_2	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1380920_2	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1380920_2	PF04531,TIGR01598,COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_4	phrog_18444	92.8	1.8e-27	N/A	unknown function
KOfam	UHGV-1380920_5	K16628	82.5	1.9e-24	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1380920_5	phrog_6616	534.2	0	tail protein	tail
UniRef90	UHGV-1380920_5	UniRef90_A0A173TV73	2356.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-1380920_5	33035.JPJF01000043_gene1002	280.0	0	N/A	N/A
Pfam	UHGV-1380920_5	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1380920_5	PF05113,PF01835,PF03921,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_6	phrog_1194	40.0	0.000000000058	N/A	unknown function
structural_annotation	UHGV-1380920_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_7	phrog_1535	285.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1380920_7	UniRef90_A0A173TXH9	1472.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1380920_7	411459.RUMOBE_01384	276.0	0	phage tail tape measure protein	N/A
COG	UHGV-1380920_7	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1380920_7	PF11172	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_8	phrog_706	136.0	2.1e-40	N/A	unknown function
UniRef90	UHGV-1380920_8	UniRef90_A0A173TZF2	381.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1380920_8	33035.JPJF01000106_gene3124	203.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1380920_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1380920_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_9	phrog_11299	72.5	6e-21	N/A	unknown function
eggNOG-mapper	UHGV-1380920_9	411459.RUMOBE_01382	72.8	0.0000000000000172	N/A	N/A
structural_annotation	UHGV-1380920_9	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_10	phrog_3099	124.9	4.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-1380920_10	411902.CLOBOL_00129	158.0	0	N/A	N/A
structural_annotation	UHGV-1380920_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_11	phrog_3266	79.8	2.8e-23	tail completion	connector
eggNOG-mapper	UHGV-1380920_11	476272.RUMHYD_01781	186.0	0	N/A	N/A
structural_annotation	UHGV-1380920_11	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_12	phrog_556	63.7	1.7e-18	minor head protein	head and packaging
UniRef90	UHGV-1380920_12	UniRef90_UPI000E4989EB	154.0	2.8026e-45	minor capsid protein	N/A
eggNOG-mapper	UHGV-1380920_12	476272.RUMHYD_01780	170.0	0	N/A	N/A
Pfam	UHGV-1380920_12	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1380920_12	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_13	phrog_3366	86.4	3.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-1380920_13	476272.RUMHYD_01779	119.0	3.14e-32	N/A	N/A
structural_annotation	UHGV-1380920_13	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_14	phrog_541	87.0	1.6e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-1380920_14	1235790.C805_00076	167.0	0	N/A	N/A
PHROG	UHGV-1380920_15	phrog_247	225.1	0	major head protein	head and packaging
UniRef90	UHGV-1380920_15	UniRef90_UPI001BA5448B	291.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1380920_15	33035.JPJF01000106_gene3132	542.0	0	N/A	N/A
structural_annotation	UHGV-1380920_15	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1380920_16	UniRef90_UPI001C0EBA51	125.0	2.87e-32	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1380920_16	742765.HMPREF9457_02126	63.2	0.00000000125	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-1380920_18	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_19	phrog_20016	58.3	1e-16	N/A	unknown function
UniRef90	UHGV-1380920_19	UniRef90_A0A316MV88	179.0	0	BclA_C domain-containing protein	N/A
structural_annotation	UHGV-1380920_19	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1380920_20	476272.RUMHYD_01770	73.9	0.000000000000335	N/A	N/A
PHROG	UHGV-1380920_22	phrog_21718	80.6	1.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-1380920_22	1235790.C805_00058	102.0	3e-25	N/A	N/A
PHROG	UHGV-1380920_23	phrog_419	93.4	3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1380920_23	358220.C380_08880	90.5	2.74e-21	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
structural_annotation	UHGV-1380920_23	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_24	phrog_1048	42.9	0.00000000001	N/A	unknown function
eggNOG-mapper	UHGV-1380920_24	457412.RSAG_01107	90.9	1.67e-21	N/A	N/A
UniRef90	UHGV-1380920_25	UniRef90_A0A417UWY7	202.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-1380920_25	476272.RUMHYD_01766	59.3	0.000000000533	N/A	N/A
PHROG	UHGV-1380920_26	phrog_581	260.9	0	minor head protein	head and packaging
UniRef90	UHGV-1380920_26	UniRef90_A0A173TY40	768.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1380920_26	33035.JPJF01000106_gene3134	395.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1380920_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1380920_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1380920_26	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_27	phrog_533	255.6	0	portal protein	head and packaging
UniRef90	UHGV-1380920_27	UniRef90_A0A173TY48	910.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1380920_27	33035.JPJF01000106_gene3135	448.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1380920_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1380920_29	K06909	332.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1380920_29	phrog_3717	165.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1380920_29	UniRef90_UPI00156DBE69	827.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1380920_29	33035.JPJF01000106_gene3136	392.0	0	Terminase small subunit	N/A
Pfam	UHGV-1380920_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1380920_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1380920_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1380920_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1380920_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_30	phrog_606	87.6	1.4e-25	terminase small subunit	head and packaging
UniRef90	UHGV-1380920_30	UniRef90_UPI0004BAB6EB	144.0	8.56053e-42	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1380920_30	397290.C810_05185	154.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-1380920_30	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1380920_30	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1380920_33	K07727	46.5	0.00000000000094	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1380920_33	UniRef90_UPI001BA79D8F	149.0	1.4013e-45	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1380920_33	877411.JMMA01000002_gene1483	68.9	0.0000000000000133	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1380920_33	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1380920_33	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_37	phrog_99	65.4	1.1e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380920_37	UniRef90_A0A1C6HBF7	309.0	0	AP2 domain	N/A
eggNOG-mapper	UHGV-1380920_37	1410624.JNKK01000065_gene1264	118.0	1.11e-28	N/A	N/A
Pfam	UHGV-1380920_37	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-1380920_37	PF00847,MF_01580,NF007510	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_42	phrog_229	111.9	3.3e-33	MazG-like pyrophosphatase	other
UniRef90	UHGV-1380920_42	UniRef90_A0A173TWB1	270.0	0	MazG nucleotide pyrophosphohydrolase domain	N/A
eggNOG-mapper	UHGV-1380920_42	445335.CBN_1365	98.2	8.74e-25	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1380920_42	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1380920_42	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1380920_42	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1380920_43	PF14844	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1380920_46	PF11950	N/A	N/A	N/A	N/A
KOfam	UHGV-1380920_48	K00390	91.0	6.4e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1380920_48	phrog_424	117.4	1.1e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1380920_48	UniRef90_A0A417V5I1	566.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1380920_48	1232452.BAIB02000007_gene1640	357.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1380920_48	BrxP_00001	40.3	1.5e-22	BrxP	BREX
Pfam	UHGV-1380920_48	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1380920_48	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1380920_48	PF01507,MF_00063,TIGR02039,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_50	phrog_31463	110.8	1.3e-32	N/A	unknown function
UniRef90	UHGV-1380920_50	UniRef90_UPI001160B515	109.0	1.54e-27	LemA family protein	N/A
eggNOG-mapper	UHGV-1380920_51	1121871.AUAT01000002_gene1365	65.1	0.0000000000637	N/A	N/A
KOfam	UHGV-1380920_53	K07483	40.9	0.000000000045	K07483; transposase	N/A
UniRef90	UHGV-1380920_53	UniRef90_UPI001BA881F1	112.0	1.16e-29	transposase	N/A
Pfam	UHGV-1380920_53	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
structural_annotation	UHGV-1380920_53	PF13518,PF13613,NF040595,COG3415	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_54	phrog_1123	61.6	9.6e-18	N/A	unknown function
UniRef90	UHGV-1380920_54	UniRef90_A0A6N9P096	60.8	0.000000000785	DNA gyrase	N/A
eggNOG-mapper	UHGV-1380920_54	1308863.U5J9F3_9CAUD	52.4	0.000000358	N/A	N/A
structural_annotation	UHGV-1380920_54	PF03551,MF_01804,TIGR03433,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_55	phrog_270	82.4	7.7e-24	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1380920_55	742733.HMPREF9469_01845	171.0	0	N/A	N/A
structural_annotation	UHGV-1380920_55	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-1380920_56	K01160	51.0	0.000000000000039	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1380920_56	phrog_34	54.6	0.0000000000000023	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380920_56	UniRef90_A0A417V5H0	199.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1380920_56	1158604.I591_01786	85.1	5.34e-20	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1380920_56	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1380920_56	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1380920_56	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_58	phrog_7566	95.7	2.6e-28	N/A	unknown function
UniRef90	UHGV-1380920_58	UniRef90_A0A417V5I7	205.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1380920_58	1304866.K413DRAFT_1198	81.6	5.22e-19	N/A	N/A
PHROG	UHGV-1380920_59	phrog_72	48.6	0.000000000000093	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1380920_59	411490.ANACAC_00804	236.0	0	N/A	N/A
structural_annotation	UHGV-1380920_59	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_60	phrog_155	130.0	1.8e-38	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380920_60	UniRef90_A0A417V5L9	379.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1380920_60	386415.NT01CX_2192	159.0	0	ERF superfamily	N/A
Pfam	UHGV-1380920_60	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1380920_60	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_64	phrog_36464	76.7	3.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-1380920_64	742740.HMPREF9474_03484	60.8	0.0000000000196	N/A	N/A
structural_annotation	UHGV-1380920_64	PF09035	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1380920_65	cluster_17974	100.0	2.62e-31	NA	N/A
PHROG	UHGV-1380920_68	phrog_8	54.1	0.000000000000004	transcriptional regulator	transcription regulation
UniRef90	UHGV-1380920_68	UniRef90_A0A417V5F3	135.0	1.60999e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1380920_68	476272.RUMHYD_02827	81.3	1.25e-19	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1380920_68	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1380920_68	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1380920_68	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1380920_69	K22300	58.3	1.8e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1380920_69	phrog_8	69.9	5.3e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1380920_69	UniRef90_A0A417V5F8	241.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1380920_69	411459.RUMOBE_00961	93.6	1.02e-22	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1380920_69	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1380920_69	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1380920_69	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1380920_70	phrog_87	66.5	3e-19	metallo-protease	other
UniRef90	UHGV-1380920_70	UniRef90_A0A417V5H7	288.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1380920_70	1235802.C823_04751	111.0	3.76e-29	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1380920_70	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1380920_70	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1380920_70	PF06114,COG2856	N/A	N/A	N/A	N/A