UHGV-1381872 (vOTU-088571)

Viral Genome: UHGV-1381872

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1381872
vOTU ID	vOTU-088571
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0171826
Associated BioSample	SAMEA2738033
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.03 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.04
Jumbo phage	No

Genome content
Genome length (bp)	23,455
GC content	36.01%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	96%
Average CDS length (bps)	646.29
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1381872_1	phrog_7778	106.2	2.7e-31	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381872_1	UniRef90_A0A533I2Q7	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-1381872_1	562981.HMPREF0428_01001	138.0	1.73e-40	N/A	N/A
Pfam	UHGV-1381872_1	PF05037	N/A	N/A	N/A	DUF669
PHROG	UHGV-1381872_2	phrog_1252	191.5	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381872_2	UniRef90_UPI00051696E6	210.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-1381872_2	562981.HMPREF0428_01000	620.0	0	DNA polymerase elongation subunit (Family B)	N/A
COG	UHGV-1381872_2	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
KOfam	UHGV-1381872_3	K06919	49.3	0.000000000000054	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1381872_3	phrog_864	359.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381872_3	UniRef90_A0A533I266	1197.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1381872_3	562981.HMPREF0428_00999	974.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1381872_3	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1381872_3	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-1381872_3	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1381872_3	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1381872_3	PF19263,PF08706,PF03288,PF09250,MF_04000,TIGR01613,COG3378	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1381872_9	TIGR02338	N/A	N/A	N/A	N/A
PHROG	UHGV-1381872_10	phrog_7134	99.4	2.1e-29	N/A	unknown function
UniRef90	UHGV-1381872_10	UniRef90_A0A6H1F4R7	126.0	1.77e-35	Pathogenicity island protein	N/A
eggNOG-mapper	UHGV-1381872_10	562981.HMPREF0428_01414	126.0	2.97e-36	N/A	N/A
structural_annotation	UHGV-1381872_10	PF13601	N/A	N/A	N/A	N/A
UniRef90	UHGV-1381872_11	UniRef90_UPI001A470AE5	111.0	1.04e-27	med21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1381872_11	562981.HMPREF0428_01830	112.0	2.02e-29	N/A	N/A
UniRef90	UHGV-1381872_12	UniRef90_UPI001A470AE5	189.0	0	med21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1381872_12	562981.HMPREF0428_01830	176.0	0	N/A	N/A
PHROG	UHGV-1381872_16	phrog_36	46.2	0.00000000000091	transcriptional regulator	transcription regulation
UniRef90	UHGV-1381872_16	UniRef90_A0A533I0C4	285.0	0	N/A	N/A
eggNOG-mapper	UHGV-1381872_16	1211035.CD30_08135	57.4	0.0000000184	N/A	N/A
Pfam	UHGV-1381872_16	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1381872_16	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1381872_16	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1381872_17	K06223	49.4	0.000000000000052	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1381872_17	phrog_36652	156.0	0	N/A	unknown function
UniRef90	UHGV-1381872_17	UniRef90_A0A533I256	607.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-1381872_17	1329250.WOSG25_240160	267.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1381872_17	MTase_II_00075	181.1	0	Type II methyltransferase	RM
Pfam	UHGV-1381872_17	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
structural_annotation	UHGV-1381872_17	PF02086,TIGR00571,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1381872_18	phrog_620	141.9	3.59994e-42	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381872_18	UniRef90_A0A533HX25	280.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-1381872_18	562981.HMPREF0428_00988	200.0	0	chromosome segregation	N/A
PADLOC	UHGV-1381872_18	MTase_II_00015	67.4	3.1e-19	Type II methyltransferase	RM
Pfam	UHGV-1381872_18	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1381872_18	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1381872_18	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1381872_19	phrog_309	158.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-1381872_19	UniRef90_A0A533I2W3	312.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1381872_19	562981.HMPREF0428_00986	220.0	0	transposase activity	N/A
Pfam	UHGV-1381872_19	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-1381872_19	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1381872_19	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1381872_20	K06909	374.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1381872_20	phrog_3717	275.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1381872_20	UniRef90_A0A533I2U7	829.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1381872_20	1461246.X2KU22_9VIRU	656.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1381872_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1381872_20	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1381872_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
HAMAP	UHGV-1381872_20	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-1381872_20	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1381872_21	phrog_64	335.4	0	portal protein	head and packaging
UniRef90	UHGV-1381872_21	UniRef90_A0A533I0P7	885.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1381872_21	1347392.CCEZ01000005_gene1230	237.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1381872_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1381872_21	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1381872_21	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1381872_22	phrog_115	234.3	0	minor head protein	head and packaging
UniRef90	UHGV-1381872_22	UniRef90_A0A533HX40	586.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1381872_22	1140002.I570_02911	164.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1381872_22	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1381872_22	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1381872_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1381872_23	TIGR04165,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1381872_24	phrog_172	95.0	1.1e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-1381872_24	UniRef90_A0A533I159	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-1381872_24	272558.10176153	75.1	0.0000000000000564	N/A	N/A
Pfam	UHGV-1381872_24	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1381872_24	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1381872_25	phrog_422	156.1	0	major head protein	head and packaging
UniRef90	UHGV-1381872_25	UniRef90_A0A533HZ87	544.0	0	Sugar-binding protein	N/A
eggNOG-mapper	UHGV-1381872_25	1277891.M1IF90_9CAUD	245.0	0	N/A	N/A
PHROG	UHGV-1381872_26	phrog_132	67.6	1.6e-19	head-tail adaptor	connector
UniRef90	UHGV-1381872_26	UniRef90_A0A533I2P1	213.0	0	Phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1381872_26	1120978.KB894087_gene438	56.2	0.0000000111	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1381872_26	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
PHROG	UHGV-1381872_33	phrog_58	176.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1381872_33	UniRef90_A0A533HZZ3	1350.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1381872_33	1329516.JPST01000014_gene668	161.0	4.15e-38	tape measure	N/A
Pfam	UHGV-1381872_33	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1381872_33	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1381872_33	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1381872_33	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1381872_34	phrog_33	46.4	0.00000000000092	distal tail protein Dit	tail
UniRef90	UHGV-1381872_34	UniRef90_A0A8B1YSX1	166.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-1381872_34	999425.HMPREF9186_02046	163.0	0	N/A	N/A
COG	UHGV-1381872_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1381872_34	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1381872_35	phrog_2270	337.4	0	N/A	unknown function
UniRef90	UHGV-1381872_35	UniRef90_A0A2N6SFH4	367.0	0	Prophage_tail domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1381872_35	1214184.ALKY01000039_gene907	248.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1381872_35	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1381872_35	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1381872_35	COG1511	N/A	N/A	N/A	N/A