UHGV-1382470 (vOTU-063366)

Viral Genome: UHGV-1382470

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1382470
vOTU ID	vOTU-063366
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0274699
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9781
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.04
Jumbo phage	No

Genome content
Genome length (bp)	41,171
GC content	49.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	91%
Average CDS length (bps)	545.09
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1382470_1	K14059	150.7	1.82169e-44	int; integrase	N/A
PHROG	UHGV-1382470_1	phrog_1	145.7	3.9937e-43	integrase	integration and excision
UniRef90	UHGV-1382470_1	UniRef90_A0A1Y4T0F9	330.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1382470_1	748224.HMPREF9436_03382	245.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1382470_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1382470_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1382470_1	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1382470_2	500635.MITSMUL_05163	71.6	0.0000000000327	N/A	N/A
KOfam	UHGV-1382470_4	K22300	73.0	5.3e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1382470_4	phrog_8	63.9	3.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1382470_4	UniRef90_A0A564SVW9	135.0	8.62e-39	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-1382470_4	748224.HMPREF9436_01444	100.0	3.31e-25	N/A	N/A
Pfam	UHGV-1382470_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1382470_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1382470_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382470_7	UniRef90_A0A367GIH6	115.0	1.18e-31	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1382470_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1382470_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1382470_7	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_9	phrog_5070	121.2	4.7e-36	N/A	unknown function
UniRef90	UHGV-1382470_9	UniRef90_A0A174CB23	139.0	5.59e-37	Predicted acyltransferase	N/A
eggNOG-mapper	UHGV-1382470_9	411470.RUMGNA_02189	132.0	2.52e-35	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1382470_9	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1382470_9	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
PHROG	UHGV-1382470_10	phrog_674	145.0	5.00264e-43	N/A	unknown function
UniRef90	UHGV-1382470_10	UniRef90_A0A7X9AE52	142.0	4.59e-37	N/A	N/A
eggNOG-mapper	UHGV-1382470_10	1227266.HMPREF1551_00563	114.0	4.34e-27	N/A	N/A
Pfam	UHGV-1382470_10	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1382470_10	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1382470_11	K07455	173.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1382470_11	phrog_148	204.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1382470_11	UniRef90_A0A329URJ6	454.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1382470_11	1408437.JNJN01000039_gene372	370.0	0	RecT family	N/A
Pfam	UHGV-1382470_11	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1382470_11	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1382470_11	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1382470_11	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_12	phrog_392	111.6	9.4e-33	metal-dependent hydrolase	other
UniRef90	UHGV-1382470_12	UniRef90_UPI0012DD1D82	261.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1382470_12	665956.HMPREF1032_03101	201.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1382470_12	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1382470_12	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1382470_12	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_13	phrog_16304	63.4	4.5e-18	N/A	unknown function
Pfam	UHGV-1382470_13	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1382470_13	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_15	phrog_824	141.5	2.7003e-42	N/A	unknown function
UniRef90	UHGV-1382470_15	UniRef90_A0A6N8GXS9	154.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1382470_15	665956.HMPREF1032_00132	137.0	7.94e-40	VRR_NUC	N/A
Pfam	UHGV-1382470_15	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-1382470_16	phrog_757	195.6	0	DNA methyltransferase	other
UniRef90	UHGV-1382470_16	UniRef90_A0A355KVL2	380.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1382470_16	748224.HMPREF9436_03069	395.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1382470_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1382470_16	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382470_26	UniRef90_UPI0013EF5B35	69.7	0.000000000000661	N/A	N/A
structural_annotation	UHGV-1382470_26	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_29	phrog_36	64.6	1.9e-18	transcriptional regulator	transcription regulation
COG	UHGV-1382470_29	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1382470_29	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1382470_31	K00571	121.7	9e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1382470_31	phrog_498	451.6	0	DNA methyltransferase	other
UniRef90	UHGV-1382470_31	UniRef90_A0A101WI32	481.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1382470_31	742823.HMPREF9465_00225	439.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-1382470_31	MTase_II_00015	397.8	0	Type II methyltransferase	RM
Pfam	UHGV-1382470_31	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1382470_31	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1382470_31	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1382470_31	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1382470_34	K06909	401.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1382470_34	phrog_3717	160.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1382470_34	UniRef90_UPI001C3B9235	625.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1382470_34	411471.SUBVAR_06507	576.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1382470_34	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1382470_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1382470_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1382470_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1382470_34	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_35	phrog_64	173.6	0	portal protein	head and packaging
UniRef90	UHGV-1382470_35	UniRef90_UPI0018A8A301	614.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1382470_35	673376.F2VHW1_9CAUD	217.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1382470_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1382470_35	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_37	phrog_8680	234.5	0	N/A	unknown function
UniRef90	UHGV-1382470_37	UniRef90_UPI00189ACAD3	315.0	0	N/A	N/A
eggNOG-mapper	UHGV-1382470_37	411470.RUMGNA_02208	217.0	0	N/A	N/A
Pfam	UHGV-1382470_37	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1382470_37	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_39	phrog_2468	113.5	2.9e-34	head morphogenesis	head and packaging
UniRef90	UHGV-1382470_39	UniRef90_A0A7X5E1T7	419.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1382470_39	1504822.CCNO01000013_gene286	189.0	0	cell adhesion	N/A
Pfam	UHGV-1382470_39	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1382470_39	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1382470_39	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_40	phrog_5	72.6	8.1e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-1382470_40	UniRef90_UPI001411BC8C	179.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1382470_40	1540257.JQMW01000009_gene3375	92.0	6.14e-22	N/A	N/A
Pfam	UHGV-1382470_40	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1382470_40	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1382470_40	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382470_41	UniRef90_A0A6B9SU02	94.4	2.03e-20	Fibronectin autolysin	N/A
structural_annotation	UHGV-1382470_41	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_42	phrog_544	117.4	1.4e-34	major head protein	head and packaging
UniRef90	UHGV-1382470_42	UniRef90_A0A1C6B5R0	322.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1382470_42	476272.RUMHYD_01776	293.0	0	N/A	N/A
structural_annotation	UHGV-1382470_42	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_44	phrog_17977	81.0	1e-23	N/A	unknown function
UniRef90	UHGV-1382470_44	UniRef90_A0A285PT57	91.3	2.07e-21	Phage head-tail joining protein	N/A
structural_annotation	UHGV-1382470_44	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1382470_45	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_46	phrog_885	61.3	1.1e-17	major tail protein	tail
UniRef90	UHGV-1382470_46	UniRef90_A0A843J9F0	179.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1382470_46	1504822.CCNO01000012_gene492	203.0	0	N/A	N/A
structural_annotation	UHGV-1382470_46	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_47	phrog_18646	52.7	0.0000000000000076	N/A	unknown function
PHROG	UHGV-1382470_49	phrog_20920	103.7	1.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-1382470_49	1536770.R50345_22870	102.0	1.57e-26	N/A	N/A
structural_annotation	UHGV-1382470_49	PF16674	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_50	phrog_6900	213.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1382470_50	UniRef90_A0A0D0SGC8	337.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-1382470_50	1437608.BBIA_2554	273.0	0	phage tail tape measure protein	N/A
COG	UHGV-1382470_50	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1382470_50	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_51	phrog_33	52.1	0.000000000000016	distal tail protein Dit	tail
UniRef90	UHGV-1382470_51	UniRef90_A0A173Z1X4	148.0	1.56e-40	Phage-related protein	N/A
eggNOG-mapper	UHGV-1382470_51	1444306.JFZC01000034_gene2623	108.0	3.83e-26	tail component	N/A
COG	UHGV-1382470_51	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1382470_51	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_52	phrog_1067	398.8	0	minor head protein	head and packaging
UniRef90	UHGV-1382470_52	UniRef90_A0A316NPB5	507.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1382470_52	1160721.RBI_I01574	397.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1382470_52	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1382470_52	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1382470_52	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1382470_52	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382470_53	UniRef90_UPI00141545C3	61.6	0.00000362	right-handed parallel beta-helix repeat-containing protein	N/A
KOfam	UHGV-1382470_54	K19304	131.8	6.9e-39	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1382470_54	phrog_10030	106.1	1.4e-31	tail length tape measure protein	tail
UniRef90	UHGV-1382470_54	UniRef90_A0A367G061	325.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1382470_54	665956.HMPREF1032_02586	103.0	1.29e-22	Peptidase family M23	N/A
Pfam	UHGV-1382470_54	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1382470_54	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1382470_54	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_55	phrog_355	54.3	0.0000000000000024	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1382470_55	UniRef90_UPI00156F0E9C	128.0	1.17e-36	N/A	N/A
eggNOG-mapper	UHGV-1382470_55	411473.RUMCAL_00360	123.0	1.57e-35	N/A	N/A
structural_annotation	UHGV-1382470_55	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_56	phrog_1863	82.2	3.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1382470_56	693746.OBV_18260	102.0	1.56e-27	N/A	N/A
PHROG	UHGV-1382470_57	phrog_1129	84.3	8.4e-25	holin	lysis
UniRef90	UHGV-1382470_57	UniRef90_A0A3R5ZDU6	132.0	1.2e-38	Holin	N/A
eggNOG-mapper	UHGV-1382470_57	1256908.HMPREF0373_00463	128.0	1.36e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1382470_57	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1382470_57	PF06946	N/A	N/A	N/A	N/A
Pfam	UHGV-1382470_58	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-1382470_58	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-1382470_58	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_59	phrog_13470	51.2	0.000000000000022	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1382470_59	UniRef90_A0A0U5PL36	144.0	2.87e-41	AP2 domain protein	N/A
eggNOG-mapper	UHGV-1382470_59	1304866.K413DRAFT_4685	139.0	4.36e-40	N/A	N/A
eggNOG-mapper	UHGV-1382470_60	1118055.CAGU01000028_gene99	97.4	5.15e-24	N/A	N/A
Pfam	UHGV-1382470_60	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1382470_60	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_62	phrog_3754	87.8	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1382470_62	476272.RUMHYD_01764	151.0	1.4013e-45	N/A	N/A
PHROG	UHGV-1382470_63	phrog_21718	116.0	2.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-1382470_63	397290.C810_05210	93.6	6.82e-22	N/A	N/A
PHROG	UHGV-1382470_64	phrog_22984	76.5	1.2e-23	N/A	unknown function
PHROG	UHGV-1382470_65	phrog_16490	177.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1382470_65	1408437.JNJN01000043_gene803	107.0	1.74e-25	N/A	N/A
PHROG	UHGV-1382470_66	phrog_20016	197.5	0	N/A	unknown function
UniRef90	UHGV-1382470_66	UniRef90_A0A285PT46	197.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1382470_66	1226322.HMPREF1545_00077	176.0	0	N/A	N/A
structural_annotation	UHGV-1382470_66	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1382470_67	phrog_28802	46.5	0.0000000000000083	N/A	unknown function
structural_annotation	UHGV-1382470_67	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1382470_68	1226322.HMPREF1545_00079	73.2	0.00000000000000357	N/A	N/A