UHGV-1382694 (vOTU-046155)

Viral Genome: UHGV-1382694

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1382694
vOTU ID	vOTU-046155
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0286027
Associated BioSample	SAMN06115522
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.93
Jumbo phage	No

Genome content
Genome length (bp)	43,315
GC content	57.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	96%
Average CDS length (bps)	714.31
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1382694_2	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1382694_7	K22300	51.4	0.000000000000024	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1382694_7	phrog_8	42.7	0.000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-1382694_7	UniRef90_A0A1Y4L0A2	116.0	3.33e-31	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1382694_7	411471.SUBVAR_05818	105.0	8.51e-28	sequence-specific DNA binding	N/A
Pfam	UHGV-1382694_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1382694_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1382694_7	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382694_11	UniRef90_A7VNR4	55.5	0.000000821	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1382694_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1382694_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1382694_11	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1382694_12	K14059	132.3	7.1e-39	int; integrase	N/A
PHROG	UHGV-1382694_12	phrog_1	142.5	3.50044e-42	integrase	integration and excision
UniRef90	UHGV-1382694_12	UniRef90_A0A2Z4QB94	313.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1382694_12	641112.ACOK01000111_gene1860	114.0	4.34e-26	Phage integrase family	N/A
Pfam	UHGV-1382694_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1382694_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1382694_12	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382694_13	UniRef90_A0A7M1RTM1	67.4	0.0000000000753	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1382694_13	1378168.N510_03079	68.9	0.000000000008	N/A	N/A
PHROG	UHGV-1382694_16	phrog_5783	299.9	0	N/A	unknown function
UniRef90	UHGV-1382694_16	UniRef90_A0A7X2P6J8	291.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-1382694_16	742742.HMPREF9452_00448	280.0	0	NYN domain	N/A
Pfam	UHGV-1382694_16	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-1382694_16	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-1382694_16	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382694_17	UniRef90_A0A843IZ65	63.5	0.0000000000106	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-1382694_17	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-1382694_17	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1382694_17	PF04545,MF_00245,TIGR02985,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1382694_18	K01447	105.5	7e-31	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1382694_18	phrog_1794	109.7	3.7e-32	amidase	lysis
UniRef90	UHGV-1382694_18	UniRef90_A0A3D4VSU2	166.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1382694_18	411470.RUMGNA_02087	150.0	6.32e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1382694_18	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1382694_18	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1382694_18	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1382694_19	phrog_6918	93.0	2.1e-27	holin	lysis
UniRef90	UHGV-1382694_19	UniRef90_A0A316QCY7	96.7	7.38e-24	Holin	N/A
eggNOG-mapper	UHGV-1382694_19	1297617.JPJD01000020_gene301	95.1	5.15e-24	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1382694_19	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1382694_19	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1382694_21	phrog_937	51.5	0.000000000000017	hemolysin	other
eggNOG-mapper	UHGV-1382694_21	1519439.JPJG01000023_gene533	74.7	9.27e-16	N/A	N/A
KOfam	UHGV-1382694_22	K20846	63.1	2.7e-18	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-1382694_22	phrog_215	91.3	1.9e-26	structural protein with Ig domain	head and packaging
UniRef90	UHGV-1382694_22	UniRef90_A0A1I1Z9R5	110.0	4.94e-22	Calcineurin-like phosphoesterase	N/A
eggNOG-mapper	UHGV-1382694_22	203275.BFO_0575	83.6	0.0000000000000669	Bacterial group 2 Ig-like protein	N/A
Pfam	UHGV-1382694_22	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1382694_22	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1382694_22	PF02368,PF09423,MF_00575,NF003743,NF005261,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1382694_23	phrog_5240	49.4	0.000000000000031	tail fiber protein	tail
UniRef90	UHGV-1382694_23	UniRef90_R6LGA5	873.0	0	SGNH_hydro domain-containing protein	N/A
structural_annotation	UHGV-1382694_23	PF16255,COG2755	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1382694_24	1232443.BAIA02000078_gene14	59.7	0.00000032	nuclear chromosome segregation	N/A
COG	UHGV-1382694_24	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
KOfam	UHGV-1382694_25	K16617	42.7	0.0000000000039	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-1382694_25	phrog_819	41.6	5e-16	tail protein	tail
Pfam	UHGV-1382694_25	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1382694_25	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1382694_26	PF18962,NF011773	N/A	N/A	N/A	N/A
PHROG	UHGV-1382694_27	phrog_22978	81.2	4.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-1382694_27	1519439.JPJG01000060_gene1905	697.0	0	N/A	N/A
Pfam	UHGV-1382694_27	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
UniRef90	UHGV-1382694_28	UniRef90_R5DCX9	191.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1382694_28	1410650.JHWL01000003_gene2815	129.0	1.14e-30	N/A	N/A
eggNOG-mapper	UHGV-1382694_30	537007.BLAHAN_05255	64.7	0.0000000285	N/A	N/A
PHROG	UHGV-1382694_31	phrog_12105	114.6	5.6e-34	N/A	unknown function
PHROG	UHGV-1382694_32	phrog_15239	45.5	0.0000000000011	N/A	unknown function
PHROG	UHGV-1382694_33	phrog_1357	239.2	0	major head protein	head and packaging
UniRef90	UHGV-1382694_33	UniRef90_A0A2V2CFL5	393.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1382694_33	1410650.JHWL01000003_gene2830	295.0	0	N/A	N/A
Pfam	UHGV-1382694_33	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1382694_33	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1382694_33	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1382694_34	phrog_13908	189.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1382694_34	1410650.JHWL01000003_gene2831	127.0	8.82e-32	N/A	N/A
PHROG	UHGV-1382694_35	phrog_156	304.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1382694_35	1410650.JHWL01000003_gene2833	530.0	0	N/A	N/A
structural_annotation	UHGV-1382694_35	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1382694_36	phrog_511	212.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1382694_36	1410650.JHWL01000003_gene2827	327.0	0	N/A	N/A
structural_annotation	UHGV-1382694_36	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-1382694_37	K06909	134.5	1e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1382694_37	phrog_2	123.4	2.9e-36	terminase large subunit	head and packaging
UniRef90	UHGV-1382694_37	UniRef90_A0A810Q5R0	610.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1382694_37	1410650.JHWL01000003_gene2834	574.0	0	N/A	N/A
Pfam	UHGV-1382694_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1382694_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1382694_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1382694_40	phrog_3584	118.3	6e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1382694_40	537013.CLOSTMETH_02141	82.4	1.52e-16	N/A	N/A
structural_annotation	UHGV-1382694_40	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1382694_41	665956.HMPREF1032_03087	55.8	0.0000000118	N/A	N/A
PHROG	UHGV-1382694_45	phrog_190	103.3	2.2e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1382694_45	UniRef90_UPI0006C2AC63	125.0	9.29e-34	N/A	N/A
eggNOG-mapper	UHGV-1382694_45	693746.OBV_25250	117.0	1.23e-31	N/A	N/A
Pfam	UHGV-1382694_45	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1382694_45	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1382694_48	phrog_31029	63.7	2.6e-18	N/A	unknown function
PHROG	UHGV-1382694_49	phrog_38832	55.8	6.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1382694_49	1232443.BAIA02000078_gene48	63.2	0.0000000000153	N/A	N/A
structural_annotation	UHGV-1382694_49	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
KOfam	UHGV-1382694_50	K19170	50.0	0.0000000000000023	dndC; DNA sulfur modification protein DndC	N/A
PHROG	UHGV-1382694_50	phrog_424	68.7	9e-20	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1382694_50	UniRef90_UPI001D087498	281.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1382694_50	1408437.JNJN01000032_gene2312	223.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-1382694_50	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1382694_50	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1382694_50	PF01507,MF_00064,TIGR02039,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1382694_51	K00558	152.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1382694_51	phrog_363	240.6	0	DNA methyltransferase	other
UniRef90	UHGV-1382694_51	UniRef90_G4KRB8	346.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1382694_51	693746.OBV_01900	346.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1382694_51	MTase_II_00058	115.1	3.3e-34	Type II methyltransferase	RM
Pfam	UHGV-1382694_51	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1382694_51	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1382694_51	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1382694_51	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1382694_54	PF05082	N/A	N/A	N/A	N/A
UniRef90	UHGV-1382694_56	UniRef90_A0A098GES5	102.0	2.31e-26	Putative phage associated protein	N/A
structural_annotation	UHGV-1382694_56	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A