UHGV-1383000 (vOTU-118381)

Viral Genome: UHGV-1383000

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1383000
vOTU ID	vOTU-118381
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0172809
Associated BioSample	SAMEA2466910
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.92 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9748
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.06
Jumbo phage	No

Genome content
Genome length (bp)	23,594
GC content	40.07%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	88%
Average CDS length (bps)	441.19
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.92)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1383000_1	phrog_10693	71.3	1.4e-20	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1383000_1	UniRef90_UPI001A9B735B	225.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1383000_1	64186.O64284_9CAUD	85.5	0.0000000000000121	peptidoglycan catabolic process	N/A
KOfam	UHGV-1383000_3	K07273	197.0	0	acm; lysozyme	N/A
PHROG	UHGV-1383000_3	phrog_6745	175.3	0	endolysin	lysis
UniRef90	UHGV-1383000_3	UniRef90_A0A412ERJ4	968.0	0	NlpC/P60 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1383000_3	457412.RSAG_00790	417.0	0	CHAP domain	N/A
Pfam	UHGV-1383000_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1383000_3	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
Pfam	UHGV-1383000_3	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1383000_3	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1383000_3	PF01183,PF05382,NF003627,TIGR02219,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-1383000_4	K14059	146.5	3.29305e-43	int; integrase	N/A
PHROG	UHGV-1383000_4	phrog_1	148.5	5.32493e-44	integrase	integration and excision
UniRef90	UHGV-1383000_4	UniRef90_A0A395X9D5	737.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1383000_4	1304866.K413DRAFT_1180	360.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1383000_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1383000_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1383000_4	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1383000_5	phrog_8545	66.1	5e-19	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1383000_5	UniRef90_UPI001C0EAFDF	260.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-1383000_5	1304866.K413DRAFT_0836	181.0	0	tRNA_anti-like	N/A
Pfam	UHGV-1383000_5	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-1383000_5	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-1383000_6	K07705	135.4	4.2e-40	lytT, lytR; two-component system, LytTR family, response regulator LytT	N/A
PHROG	UHGV-1383000_6	phrog_8810	129.3	3e-38	N/A	unknown function
UniRef90	UHGV-1383000_6	UniRef90_UPI001D0E4226	464.0	0	LytTR family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1383000_6	556261.HMPREF0240_03082	139.0	5.18e-38	response regulator	N/A
Pfam	UHGV-1383000_6	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-1383000_6	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-1383000_6	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-1383000_6	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
KOfam	UHGV-1383000_9	K18830	61.4	1.4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1383000_9	phrog_8	51.2	0.0000000000000091	transcriptional regulator	transcription regulation
UniRef90	UHGV-1383000_9	UniRef90_R5GZQ0	134.0	1.95e-38	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1383000_9	748224.HMPREF9436_01444	128.0	2.64e-36	N/A	N/A
PADLOC	UHGV-1383000_9	retron_type_VI_hth_cluster2_1	45.7	0.00000000000028	N/A	Retron
Pfam	UHGV-1383000_9	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1383000_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1383000_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383000_10	UniRef90_A0A1M6M2C3	76.3	3.41e-17	DNA binding domain-containing protein, excisionase family	N/A
eggNOG-mapper	UHGV-1383000_10	610130.Closa_1362	73.2	9.74e-17	Helix-turn-helix domain	N/A
Pfam	UHGV-1383000_10	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1383000_10	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1383000_10	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1383000_13	PF21441,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1383000_14	phrog_7964	299.5	0	N/A	unknown function
UniRef90	UHGV-1383000_14	UniRef90_A0A285PUH1	114.0	1.64e-27	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-1383000_14	665950.HMPREF1025_02555	80.1	0.00000000000000324	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1383000_14	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
Pfam	UHGV-1383000_14	PF04519	N/A	N/A	Polymer-forming cytoskeletal	Bactofilin
COG	UHGV-1383000_14	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1383000_14	MF_01691,NF040481,COG2171	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383000_16	UniRef90_A0A395X9S5	149.0	1.4013e-45	Toxin HipA	N/A
eggNOG-mapper	UHGV-1383000_16	478749.BRYFOR_05417	85.5	5.17e-21	N/A	N/A
structural_annotation	UHGV-1383000_18	PF10922,TIGR03741	N/A	N/A	N/A	N/A
PHROG	UHGV-1383000_20	phrog_253	118.4	5.4e-35	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383000_20	UniRef90_UPI001C3A3B51	174.0	0	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1383000_20	411470.RUMGNA_02192	171.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-1383000_20	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1383000_20	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1383000_21	phrog_7838	143.7	1.3004e-42	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1383000_21	742767.HMPREF9456_02052	182.0	0	N/A	N/A
structural_annotation	UHGV-1383000_21	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1383000_22	phrog_72	56.2	5.6e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1383000_22	411490.ANACAC_00804	132.0	4.17e-36	N/A	N/A
structural_annotation	UHGV-1383000_22	PF05772,NF007281	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383000_23	UniRef90_UPI00164A90AD	134.0	1.11e-38	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1383000_23	1235800.C819_02254	139.0	4.25995e-41	HNH nucleases	N/A
PHROG	UHGV-1383000_24	phrog_244	71.3	1.9e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1383000_24	33035.JPJF01000122_gene2460	165.0	0	N/A	N/A
structural_annotation	UHGV-1383000_24	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1383000_25	phrog_10469	108.1	7.1e-35	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383000_25	UniRef90_A0A174WT25	276.0	0	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-1383000_25	97138.C820_00775	186.0	0	DnaD domain protein	N/A
COG	UHGV-1383000_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-1383000_26	K02315	141.7	6.39973e-42	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1383000_26	phrog_50	138.4	5.79997e-41	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383000_26	UniRef90_UPI001D06D025	514.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1383000_26	397291.C804_01604	244.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-1383000_26	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1383000_26	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1383000_26	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1383000_28	596152.DesU5LDRAFT_1910	77.4	0.00000000000000755	N/A	N/A
structural_annotation	UHGV-1383000_28	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-1383000_30	K00558	238.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1383000_30	phrog_116	264.0	0	DNA methyltransferase	other
UniRef90	UHGV-1383000_30	UniRef90_A0A1C5MBD4	820.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1383000_30	1499683.CCFF01000017_gene2594	471.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1383000_30	MTase_II_00058	237.9	0	Type II methyltransferase	RM
Pfam	UHGV-1383000_30	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1383000_30	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1383000_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1383000_30	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1383000_31	PF18350,TIGR00739,COG1862	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1383000_32	NF041070	N/A	N/A	N/A	N/A
PHROG	UHGV-1383000_33	phrog_4601	51.4	0.000000000000017	N/A	unknown function
structural_annotation	UHGV-1383000_33	PF17888	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1383000_34	457412.RSAG_01159	254.0	0	N/A	N/A
structural_annotation	UHGV-1383000_34	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-1383000_35	phrog_15198	46.1	0.00000000000068	N/A	unknown function
UniRef90	UHGV-1383000_35	UniRef90_UPI000E4C0B2A	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-1383000_35	658655.HMPREF0988_00863	50.8	0.00000398	N/A	N/A
Pfam	UHGV-1383000_35	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-1383000_38	476272.RUMHYD_01751	48.1	0.00000928	N/A	N/A
AcrCatalog	UHGV-1383000_38	cluster_11670	43.1	0.0000000316	NA	N/A
eggNOG-mapper	UHGV-1383000_39	397291.C804_00971	79.3	2.83e-17	N/A	N/A
structural_annotation	UHGV-1383000_39	PF02701,TIGR03655,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-1383000_40	phrog_20593	72.0	6e-21	N/A	unknown function
PHROG	UHGV-1383000_41	phrog_8684	129.6	1.6e-38	N/A	unknown function
UniRef90	UHGV-1383000_41	UniRef90_A0A395X9H4	319.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1383000_41	457412.RSAG_01162	233.0	0	YopX protein	N/A
Pfam	UHGV-1383000_41	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1383000_41	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1383000_41	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1383000_43	397290.C810_05184	54.7	0.0000000546	N/A	N/A
PHROG	UHGV-1383000_46	phrog_10714	49.4	0.000000000000086	N/A	unknown function