UHGV-1383405 (vOTU-034033)

Viral Genome: UHGV-1383405

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1383405
vOTU ID	vOTU-034033
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0171736
Associated BioSample	SAMN02333922
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.46 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.2
Jumbo phage	No

Genome content
Genome length (bp)	23,442
GC content	45.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	92%
Average CDS length (bps)	467.41
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1383405_1	phrog_115	47.2	0.00000000000037	minor head protein	head and packaging
eggNOG-mapper	UHGV-1383405_1	1235796.C815_00924	48.9	0.0000036	head morphogenesis protein, SPP1 gp7 family	N/A
COG	UHGV-1383405_1	COG1372	N/A	N/A	Intein/homing endonuclease	N/A
PHROG	UHGV-1383405_2	phrog_64	398.4	0	portal protein	head and packaging
UniRef90	UHGV-1383405_2	UniRef90_A0A352CU27	597.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1383405_2	1235796.C815_00925	506.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1383405_2	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1383405_2	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1383405_2	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1383405_3	K06909	135.2	5.70001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1383405_3	phrog_10250	187.0	0	N/A	unknown function
UniRef90	UHGV-1383405_3	UniRef90_UPI00088B4057	533.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1383405_3	411490.ANACAC_00783	517.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1383405_3	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1383405_3	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1383405_3	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1383405_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1383405_3	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1383405_4	phrog_2412	85.0	8.9e-25	N/A	unknown function
UniRef90	UHGV-1383405_4	UniRef90_UPI001C38E948	108.0	6.42e-28	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-1383405_4	556268.OFAG_00320	71.2	0.0000000000000706	N/A	N/A
KOfam	UHGV-1383405_5	K06223	63.7	2.7e-18	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1383405_5	phrog_56	99.5	2.9e-29	DNA methyltransferase	other
UniRef90	UHGV-1383405_5	UniRef90_UPI000E4B6029	155.0	3.24961e-42	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-1383405_5	1688.BCUN_0619	143.0	2.34e-38	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1383405_5	MTase_II_00075	44.4	2.5e-22	Type II methyltransferase	RM
Pfam	UHGV-1383405_5	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
structural_annotation	UHGV-1383405_5	PF02086,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1383405_7	phrog_7153	41.9	0.00000000001	zinc-finger protease	other
structural_annotation	UHGV-1383405_7	PF15887,COG4307	N/A	N/A	N/A	N/A
KOfam	UHGV-1383405_8	K03497	67.1	2.6e-19	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1383405_8	phrog_940	414.3	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383405_8	UniRef90_UPI00066D34BE	403.0	0	N/A	N/A
eggNOG-mapper	UHGV-1383405_8	1123302.KB904167_gene511	397.0	0	N/A	N/A
PADLOC	UHGV-1383405_8	MTase_II_00015	91.4	1.5e-26	Type II methyltransferase	RM
Pfam	UHGV-1383405_8	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1383405_8	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1383405_8	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1383405_8	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-1383405_11	phrog_36	65.0	1.5e-18	transcriptional regulator	transcription regulation
Pfam	UHGV-1383405_11	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-1383405_11	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1383405_11	PF04545,PF01920,MF_00674,TIGR01637,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1383405_14	phrog_21026	46.1	0.00000000000065	N/A	unknown function
PHROG	UHGV-1383405_16	phrog_190	134.8	5.30001e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383405_16	UniRef90_A0A6N7XIA3	152.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1383405_16	1236514.BAKL01000051_gene3708	104.0	1.06e-27	N/A	N/A
Pfam	UHGV-1383405_16	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1383405_16	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383405_18	UniRef90_UPI0012923FF4	99.8	4.07e-26	helix-turn-helix domain-containing protein	N/A
COG	UHGV-1383405_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1383405_18	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1383405_19	phrog_253	112.0	5.1e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383405_19	UniRef90_A7B3R2	150.0	1.09301e-43	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1383405_19	411470.RUMGNA_02192	150.0	1.82169e-44	Siphovirus Gp157	N/A
Pfam	UHGV-1383405_19	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1383405_19	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1383405_21	phrog_8489	191.4	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383405_21	UniRef90_I8RAX4	207.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-1383405_21	1136177.KCA1_1070	207.0	0	DnaD domain protein	N/A
COG	UHGV-1383405_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1383405_21	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1383405_22	K03111	140.9	1.29998e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1383405_22	phrog_44	136.6	1.6e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383405_22	UniRef90_A0A6N7XL53	151.0	2.38221e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1383405_22	936375.HMPREF1152_1764	142.0	1.04999e-41	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1383405_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1383405_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1383405_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1383405_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1383405_22	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1383405_23	phrog_72	68.0	1.1e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1383405_23	UniRef90_A0A8D9PDS2	95.5	1.68e-21	NinB protein	N/A
eggNOG-mapper	UHGV-1383405_23	1399942.U3PCT8_9CAUD	99.4	9.6e-24	N/A	N/A
Pfam	UHGV-1383405_23	PF05772	N/A	N/A	NinB protein	NinB
PHROG	UHGV-1383405_24	phrog_7566	104.6	4.7e-31	N/A	unknown function
UniRef90	UHGV-1383405_24	UniRef90_UPI001C1E3E38	62.4	0.000000000113	phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1383405_24	1304866.K413DRAFT_1198	82.0	3.82e-19	N/A	N/A
PHROG	UHGV-1383405_25	phrog_14970	273.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1383405_25	411468.CLOSCI_00315	229.0	0	double-strand break repair protein	N/A
COG	UHGV-1383405_25	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1383405_25	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383405_31	UniRef90_A0A7W0KTC0	50.4	0.000000673	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1383405_31	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1383405_31	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-1383405_31	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-1383405_31	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1383405_32	UniRef90_A0A373V5W6	50.4	0.00000148	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1383405_32	1298920.KI911353_gene527	55.8	0.00000000314	N/A	N/A
structural_annotation	UHGV-1383405_32	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1383405_33	K22300	47.8	0.00000000000033	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1383405_33	phrog_8	55.9	0.0000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1383405_33	UniRef90_D6KLD1	78.2	4.52e-16	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-1383405_33	478749.BRYFOR_07570	76.3	0.00000000000000165	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1383405_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1383405_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1383405_33	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1383405_34	K14059	210.8	0	int; integrase	N/A
PHROG	UHGV-1383405_34	phrog_1	181.6	0	integrase	integration and excision
UniRef90	UHGV-1383405_34	UniRef90_A0A7Y9B158	295.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1383405_34	936375.HMPREF1152_0651	287.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1383405_34	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1383405_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1383405_34	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1383405_34	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1383405_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1383405_35	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1383405_35	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1383405_37	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1383405_38	476272.RUMHYD_01770	90.1	1.25e-19	N/A	N/A
PHROG	UHGV-1383405_39	phrog_21718	54.7	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1383405_39	397290.C810_05210	61.2	0.000000000495	N/A	N/A
structural_annotation	UHGV-1383405_40	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
COG	UHGV-1383405_41	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1383405_41	PF18341,NF040678,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-1383405_42	K01448	96.6	2.8e-28	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1383405_42	phrog_435	131.1	1.1e-38	endolysin	lysis
UniRef90	UHGV-1383405_42	UniRef90_A0A6N7X525	271.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1383405_42	1392487.JIAD01000001_gene506	207.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1383405_42	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1383405_42	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1383405_42	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1383405_43	phrog_1129	76.9	1.5e-22	holin	lysis
UniRef90	UHGV-1383405_43	UniRef90_A0A2S0L5I2	98.6	2.01e-24	Holin	N/A
eggNOG-mapper	UHGV-1383405_43	702450.CUW_0551	66.6	0.00000000000061	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1383405_43	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1383405_43	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1383405_44	1042156.CXIVA_01580	72.8	0.000000000000004	N/A	N/A