UHGV-1384178 (vOTU-067439)

Viral Genome: UHGV-1384178

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1384178
vOTU ID	vOTU-067439
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0274273
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.19 (High-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.6
Jumbo phage	No

Genome content
Genome length (bp)	41,089
GC content	57.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	92%
Average CDS length (bps)	675.91
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1384178_1	K24213	72.8	2.7e-21	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1384178_1	phrog_819	101.8	7.7e-30	tail protein	tail
eggNOG-mapper	UHGV-1384178_1	1232443.BAIA02000078_gene14	73.2	0.000000000109	nuclear chromosome segregation	N/A
Pfam	UHGV-1384178_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1384178_1	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
Pfam	UHGV-1384178_4	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1384178_4	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_5	phrog_13256	73.1	2.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1384178_5	1226322.HMPREF1545_00607	68.6	0.0000000000000243	N/A	N/A
KOfam	UHGV-1384178_6	K01447	97.1	2.6e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1384178_6	phrog_670	118.9	5.4e-35	endolysin	lysis
UniRef90	UHGV-1384178_6	UniRef90_A0A3D4VSU2	149.0	1.85994e-41	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1384178_6	1203606.HMPREF1526_00589	84.0	7.65e-17	Ami_2	N/A
Pfam	UHGV-1384178_6	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1384178_6	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1384178_6	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1384178_7	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1384178_9	1160721.RBI_I00206	53.9	0.00000000547	N/A	N/A
structural_annotation	UHGV-1384178_9	PF10723	N/A	N/A	N/A	N/A
UniRef90	UHGV-1384178_12	UniRef90_A0A7M1RRU0	75.9	0.0000000000000478	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1384178_12	1378168.N510_03079	65.1	0.000000000183	N/A	N/A
KOfam	UHGV-1384178_13	K06400	345.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1384178_13	phrog_95	342.5	0	integrase	integration and excision
UniRef90	UHGV-1384178_13	UniRef90_G4KP73	469.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-1384178_13	693746.OBV_21880	469.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1384178_13	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1384178_13	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1384178_13	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1384178_13	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1384178_13	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1384178_14	UniRef90_A0A1Q6L177	55.1	0.00000325	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1384178_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1384178_14	PF12844,MF_00535,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1384178_18	K22300	50.4	0.000000000000051	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1384178_18	phrog_2967	42.8	0.0000000000085	transcriptional regulator	transcription regulation
UniRef90	UHGV-1384178_18	UniRef90_A0A1Q6RKG1	109.0	3.38e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1384178_18	748224.HMPREF9436_01444	103.0	1.56e-26	N/A	N/A
Pfam	UHGV-1384178_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1384178_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1384178_18	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_25	phrog_190	110.3	1.7e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1384178_25	UniRef90_UPI0006C2AC63	125.0	6.56e-34	N/A	N/A
eggNOG-mapper	UHGV-1384178_25	1226322.HMPREF1545_00295	119.0	6.23e-32	N/A	N/A
Pfam	UHGV-1384178_25	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1384178_25	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_29	phrog_9298	66.1	4.2e-19	radical SAM domain protein	other
UniRef90	UHGV-1384178_29	UniRef90_D4C6F1	315.0	0	Elp3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1384178_29	742738.HMPREF9460_03770	292.0	0	radical SAM domain protein	N/A
COG	UHGV-1384178_29	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1384178_29	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_32	phrog_38832	65.8	7e-19	N/A	unknown function
eggNOG-mapper	UHGV-1384178_32	665956.HMPREF1032_00143	77.8	1.07e-16	N/A	N/A
eggNOG-mapper	UHGV-1384178_33	1033743.CAES01000078_gene3736	62.0	0.00000000127	Flagellar Assembly Protein A	N/A
COG	UHGV-1384178_33	COG1315	N/A	N/A	Flagellar assembly protein FapA, interacts with EIIAGlc	N/A
structural_annotation	UHGV-1384178_33	COG1664	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_38	phrog_3584	116.7	1.8e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1384178_38	537013.CLOSTMETH_02141	85.5	1.24e-17	N/A	N/A
structural_annotation	UHGV-1384178_38	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_40	phrog_606	71.7	1.3e-20	terminase small subunit	head and packaging
UniRef90	UHGV-1384178_40	UniRef90_UPI001D0F42E6	138.0	4.09e-39	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1384178_40	397290.C810_05185	124.0	3.33e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-1384178_40	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
KOfam	UHGV-1384178_41	K06909	142.9	3.39955e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1384178_41	phrog_979	138.2	1.80067e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1384178_41	UniRef90_A0A810Q5R0	638.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1384178_41	1410650.JHWL01000003_gene2834	612.0	0	N/A	N/A
Pfam	UHGV-1384178_41	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1384178_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1384178_41	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_42	phrog_511	240.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1384178_42	1410650.JHWL01000003_gene2827	296.0	0	N/A	N/A
structural_annotation	UHGV-1384178_42	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1384178_43	537007.BLAHAN_05255	76.6	0.00000000000396	N/A	N/A
Pfam	UHGV-1384178_44	PF00041	N/A	N/A	Fibronectin type III domain	fn3
structural_annotation	UHGV-1384178_44	PF00041,NF010681,COG3979	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1384178_45	PF21683	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_47	phrog_156	310.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1384178_47	1410650.JHWL01000003_gene2833	546.0	0	N/A	N/A
structural_annotation	UHGV-1384178_47	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_48	phrog_13908	125.7	3.4e-37	N/A	unknown function
eggNOG-mapper	UHGV-1384178_48	1410650.JHWL01000003_gene2831	94.0	1.8e-19	N/A	N/A
PHROG	UHGV-1384178_49	phrog_1357	218.3	0	major head protein	head and packaging
UniRef90	UHGV-1384178_49	UniRef90_A0A2V2CFL5	370.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1384178_49	1410650.JHWL01000003_gene2830	289.0	0	N/A	N/A
Pfam	UHGV-1384178_49	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1384178_49	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1384178_49	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1384178_51	phrog_12105	110.0	1.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-1384178_51	1519439.JPJG01000060_gene1891	71.6	0.0000000000000249	N/A	N/A
UniRef90	UHGV-1384178_52	UniRef90_R5DCX9	151.0	1.14e-38	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1384178_52	1410650.JHWL01000003_gene2815	124.0	1.16e-28	N/A	N/A
PHROG	UHGV-1384178_53	phrog_22978	119.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1384178_53	1408437.JNJN01000039_gene389	491.0	0	heme binding	N/A
Pfam	UHGV-1384178_53	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
COG	UHGV-1384178_53	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-1384178_54	phrog_33872	58.0	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-1384178_54	693746.OBV_19740	65.5	0.000000000000608	N/A	N/A
structural_annotation	UHGV-1384178_55	PF18962,NF011773	N/A	N/A	N/A	N/A
KOfam	UHGV-1384178_56	K16628	151.3	2.8026e-45	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1384178_56	phrog_6320	88.3	9.80909e-45	tail fiber protein	tail
eggNOG-mapper	UHGV-1384178_56	1519439.JPJG01000060_gene1892	85.1	0.00000000000000546	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1384178_56	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1384178_56	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A