UHGV-1385958 (vOTU-027543)

Viral Genome: UHGV-1385958

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1385958
vOTU ID	vOTU-027543
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0219939
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.88 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.02
Jumbo phage	No

Genome content
Genome length (bp)	31,542
GC content	41.17%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	90%
Average CDS length (bps)	644.11
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1385958_1	phrog_21718	132.9	1.4e-39	N/A	unknown function
eggNOG-mapper	UHGV-1385958_1	476272.RUMHYD_01768	128.0	9.14e-36	N/A	N/A
PHROG	UHGV-1385958_2	phrog_22984	91.1	7.1e-27	N/A	unknown function
PHROG	UHGV-1385958_3	phrog_16490	48.2	0.00000000000021	N/A	unknown function
eggNOG-mapper	UHGV-1385958_3	397290.C810_05212	50.1	0.00000276	N/A	N/A
PHROG	UHGV-1385958_4	phrog_20016	205.7	0	N/A	unknown function
UniRef90	UHGV-1385958_4	UniRef90_A0A285PT46	167.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1385958_4	397290.C810_05214	187.0	0	N/A	N/A
structural_annotation	UHGV-1385958_4	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_5	phrog_28802	224.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1385958_5	476272.RUMHYD_01772	199.0	0	N/A	N/A
PHROG	UHGV-1385958_6	phrog_194	63.6	4e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-1385958_6	UniRef90_UPI001D14C9C8	185.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1385958_6	476272.RUMHYD_01775	199.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1385958_6	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1385958_7	phrog_544	162.5	0	major head protein	head and packaging
UniRef90	UHGV-1385958_7	UniRef90_A0A395X7A1	665.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1385958_7	1232453.BAIF02000011_gene3359	392.0	0	N/A	N/A
Pfam	UHGV-1385958_7	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1385958_7	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_8	phrog_541	97.4	6.6e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-1385958_8	476272.RUMHYD_01778	116.0	8.04e-31	N/A	N/A
PHROG	UHGV-1385958_10	phrog_1129	75.0	6.7e-22	holin	lysis
UniRef90	UHGV-1385958_10	UniRef90_A0A395X7B2	172.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1385958_10	411461.DORFOR_00721	114.0	5.06e-32	N/A	N/A
Pfam	UHGV-1385958_10	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1385958_10	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_11	phrog_374	215.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1385958_11	UniRef90_A0A7W0C2S3	201.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-1385958_11	86416.Clopa_4295	216.0	0	N/A	N/A
PHROG	UHGV-1385958_12	phrog_3366	97.8	9.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1385958_12	476272.RUMHYD_01779	157.0	0	N/A	N/A
structural_annotation	UHGV-1385958_12	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_13	phrog_556	64.6	1.1e-18	minor head protein	head and packaging
UniRef90	UHGV-1385958_13	UniRef90_UPI000E4989EB	300.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1385958_13	476272.RUMHYD_01780	166.0	0	N/A	N/A
Pfam	UHGV-1385958_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1385958_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_14	phrog_3266	88.7	5.1e-26	tail completion	connector
eggNOG-mapper	UHGV-1385958_14	476272.RUMHYD_01781	151.0	2.24208e-44	N/A	N/A
structural_annotation	UHGV-1385958_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_15	phrog_3099	129.5	2.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-1385958_15	411902.CLOBOL_00129	169.0	0	N/A	N/A
structural_annotation	UHGV-1385958_15	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_16	phrog_11299	64.5	1.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-1385958_16	411459.RUMOBE_01382	58.5	0.00000000586	N/A	N/A
structural_annotation	UHGV-1385958_16	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_17	phrog_706	127.8	8.2e-38	N/A	unknown function
UniRef90	UHGV-1385958_17	UniRef90_UPI001BAD00AD	206.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1385958_17	411459.RUMOBE_01383	347.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1385958_17	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1385958_17	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_18	phrog_1535	482.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1385958_18	UniRef90_A0A173R880	859.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1385958_18	476272.RUMHYD_01785	840.0	0	phage tail tape measure protein	N/A
COG	UHGV-1385958_18	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1385958_18	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_19	phrog_1194	86.2	2.8e-25	N/A	unknown function
structural_annotation	UHGV-1385958_19	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_20	phrog_6616	544.8	0	tail protein	tail
UniRef90	UHGV-1385958_20	UniRef90_A0A352BLY8	515.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1385958_20	1235798.C817_02568	144.0	4.1e-32	Prophage endopeptidase tail	N/A
COG	UHGV-1385958_20	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-1385958_20	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_21	phrog_18444	79.6	2.3e-23	N/A	unknown function
KOfam	UHGV-1385958_22	K20846	61.4	1.1e-17	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-1385958_22	phrog_5240	93.3	1.8e-27	tail fiber protein	tail
UniRef90	UHGV-1385958_22	UniRef90_UPI00156E217C	817.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1385958_22	411471.SUBVAR_07280	77.8	0.00000000000627	Bacterial Ig-like domain 2	N/A
Pfam	UHGV-1385958_22	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
Pfam	UHGV-1385958_22	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1385958_22	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
KOfam	UHGV-1385958_23	K07273	192.2	0	acm; lysozyme	N/A
PHROG	UHGV-1385958_23	phrog_6745	170.1	0	endolysin	lysis
UniRef90	UHGV-1385958_23	UniRef90_A0A173ZZ10	813.0	0	Lysozyme M1	N/A
eggNOG-mapper	UHGV-1385958_23	457412.RSAG_00790	817.0	0	CHAP domain	N/A
Pfam	UHGV-1385958_23	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1385958_23	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1385958_23	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1385958_23	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1385958_23	PF01183,TIGR02594,TIGR04303,COG3757,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-1385958_24	K14059	99.3	5.7e-29	int; integrase	N/A
PHROG	UHGV-1385958_24	phrog_1	128.7	6e-38	integrase	integration and excision
UniRef90	UHGV-1385958_24	UniRef90_A0A6L8SXX0	797.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1385958_24	1235792.C808_05256	351.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1385958_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1385958_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1385958_24	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1385958_25	UniRef90_A0A3A6GQZ1	186.0	0	Zinc ribbon domain-containing protein	N/A
COG	UHGV-1385958_25	COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_27	phrog_2967	58.3	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1385958_27	UniRef90_A0A416SLU4	251.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1385958_27	476272.RUMHYD_03305	78.2	6.14e-16	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1385958_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1385958_27	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1385958_27	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1385958_28	K22300	44.1	0.000000000004	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1385958_28	UniRef90_A0A412ELD4	134.0	8.09e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1385958_28	1235801.C822_00106	58.2	0.000000000147	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1385958_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1385958_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1385958_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_30	phrog_6058	52.4	0.0000000000000053	N/A	unknown function
UniRef90	UHGV-1385958_30	UniRef90_A0A2V1JQ38	62.4	0.000000000127	Glycogen synthase	N/A
eggNOG-mapper	UHGV-1385958_30	742733.HMPREF9469_05094	60.5	0.000000000121	N/A	N/A
structural_annotation	UHGV-1385958_35	NF011879	N/A	N/A	N/A	N/A
UniRef90	UHGV-1385958_36	UniRef90_R6RDX0	81.3	6.4e-19	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-1385958_37	phrog_2872	243.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1385958_37	UniRef90_UPI0015715A02	381.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1385958_37	1256908.HMPREF0373_00658	345.0	0	AAA domain	N/A
Pfam	UHGV-1385958_37	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1385958_37	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_38	phrog_18107	243.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1385958_38	397290.C810_05167	229.0	0	N/A	N/A
structural_annotation	UHGV-1385958_38	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_39	phrog_3490	156.3	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1385958_39	UniRef90_R9KEE1	261.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1385958_39	1256908.HMPREF0373_00660	267.0	0	N/A	N/A
Pfam	UHGV-1385958_39	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1385958_39	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1385958_40	K02316	74.7	1.3e-21	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1385958_40	phrog_11992	126.8	1.8e-37	N/A	unknown function
UniRef90	UHGV-1385958_40	UniRef90_A0A3A6GSV7	334.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1385958_40	411460.RUMTOR_02069	125.0	2.97e-34	CHC2 zinc finger	N/A
PADLOC	UHGV-1385958_40	drt-UG29	45.0	0.00000000000083	DRT	DRT
Pfam	UHGV-1385958_40	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1385958_40	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1385958_40	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-1385958_41	phrog_8841	491.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1385958_41	UniRef90_A0A3A6GQS5	1277.0	0	N/A	N/A
eggNOG-mapper	UHGV-1385958_41	411460.RUMTOR_02070	531.0	0	N/A	N/A
Pfam	UHGV-1385958_41	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1385958_41	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1385958_41	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1385958_41	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1385958_42	K15255	247.9	0	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	N/A
PHROG	UHGV-1385958_42	phrog_325	265.7	0	Dda-like helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1385958_42	UniRef90_A0A2V2D011	878.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1385958_42	1121333.JMLH01000003_gene334	273.0	0	PIF1-like helicase	N/A
PADLOC	UHGV-1385958_42	cluster10	56.5	5.9e-19	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-1385958_42	PF05970	N/A	N/A	PIF1-like helicase	PIF1
COG	UHGV-1385958_42	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1385958_42	PF05970,PF18350,MF_03176,TIGR02768,COG0507	N/A	N/A	N/A	N/A
UniRef90	UHGV-1385958_44	UniRef90_A0A6L8SWV5	95.1	1.95e-24	Winged helix-turn-helix transcriptional regulator	N/A