UHGV-1386693 (vOTU-024839)

Viral Genome: UHGV-1386693

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1386693
vOTU ID	vOTU-024839
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0219027
Associated BioSample	SAMN00791940
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.48 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.42
Jumbo phage	No

Genome content
Genome length (bp)	31,391
GC content	47.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	79%
Average CDS length (bps)	363.49
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1386693_1	K03496	104.6	1.3e-30	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1386693_1	phrog_164	79.5	5e-23	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386693_1	UniRef90_UPI0011E755C0	103.0	1.28e-25	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1386693_1	1408423.JHYA01000021_gene392	87.8	1.2e-19	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1386693_1	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1386693_1	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
PHROG	UHGV-1386693_3	phrog_4402	107.7	9.6e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386693_3	UniRef90_A0A0H5Q331	287.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1386693_3	999413.HMPREF1094_04438	124.0	9.8e-30	Initiator Replication protein	N/A
Pfam	UHGV-1386693_3	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1386693_3	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1386693_3	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1386693_3	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-1386693_6	UniRef90_A0A2A7AM70	149.0	5.56315e-43	HTH cro/C1-type domain-containing protein	N/A
PHROG	UHGV-1386693_9	phrog_8	53.8	0.0000000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-1386693_9	UniRef90_A0A1C6D4U5	90.9	2.43e-21	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-1386693_9	693746.OBV_43290	53.5	0.000000215	addiction module antidote protein HigA	N/A
Pfam	UHGV-1386693_9	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1386693_9	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1386693_9	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1386693_10	UniRef90_A0A8J6LUU7	55.1	0.000000026	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-1386693_10	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1386693_11	phrog_4652	89.2	8.8e-27	N/A	unknown function
UniRef90	UHGV-1386693_11	UniRef90_A0A0P0DZ87	125.0	1.87e-32	Cubilin	N/A
eggNOG-mapper	UHGV-1386693_11	397290.C810_01459	163.0	0	N/A	N/A
structural_annotation	UHGV-1386693_11	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1386693_12	phrog_15946	87.1	2.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-1386693_12	1041147.AUFB01000014_gene330	58.9	0.0000000121	N/A	N/A
structural_annotation	UHGV-1386693_13	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386693_14	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-1386693_16	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1386693_16	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386693_17	PF14143	N/A	N/A	N/A	N/A
COG	UHGV-1386693_18	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1386693_18	PF04606,NF007241	N/A	N/A	N/A	N/A
Pfam	UHGV-1386693_20	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
structural_annotation	UHGV-1386693_20	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-1386693_21	phrog_155	149.4	1.96182e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386693_21	UniRef90_E2ZNS9	271.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-1386693_21	748224.HMPREF9436_03360	271.0	0	ERF superfamily	N/A
Pfam	UHGV-1386693_21	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1386693_21	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1386693_22	K03111	117.6	1.6e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1386693_22	phrog_44	124.7	7.2e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386693_22	UniRef90_A0A6N7TNV3	157.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1386693_22	748224.HMPREF9436_03359	152.0	1.4013e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1386693_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1386693_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1386693_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1386693_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1386693_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1386693_23	phrog_59	118.2	3.3e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386693_23	UniRef90_A0A8D4LFG4	142.0	8.46e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1386693_23	945021.TEH_18310	138.0	7.92e-39	NUMOD4 motif	N/A
PADLOC	UHGV-1386693_23	HEase_00016	77.9	1.5e-24	homing endonuclease	RM
Pfam	UHGV-1386693_23	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1386693_23	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1386693_23	PF13392,PF20987	N/A	N/A	N/A	N/A
PHROG	UHGV-1386693_25	phrog_843	62.6	4.3e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386693_25	UniRef90_UPI001159D907	115.0	2.94e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1386693_25	929506.CbC4_1203	107.0	6.26e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1386693_25	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386693_28	PF11998,COG5420	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386693_31	PF03465,COG2331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386693_33	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386693_34	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-1386693_36	UniRef90_UPI0012DD33A2	313.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1386693_36	596329.HMPREF0631_0252	216.0	0	restriction endonuclease	N/A
PADLOC	UHGV-1386693_36	MTase_II_00176	158.6	0	Type II methyltransferase	RM
COG	UHGV-1386693_36	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
PHROG	UHGV-1386693_37	phrog_30878	63.8	1.2e-19	N/A	unknown function
structural_annotation	UHGV-1386693_44	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-1386693_45	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1386693_45	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-1386693_48	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1386693_48	PF14354,TIGR03655,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1386693_49	phrog_15768	83.5	8.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1386693_49	525373.HMPREF0766_10096	55.5	0.0000021	N/A	N/A
Pfam	UHGV-1386693_49	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1386693_49	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1386693_50	K02314	211.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1386693_50	phrog_19	215.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386693_50	UniRef90_UPI001CBC4B63	426.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1386693_50	1203606.HMPREF1526_01325	155.0	5.94001e-40	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1386693_50	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1386693_50	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1386693_50	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1386693_51	phrog_1709	59.1	7.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1386693_51	1280686.AUKE01000002_gene1328	77.0	3.35e-17	N/A	N/A
PHROG	UHGV-1386693_55	phrog_434	43.1	0.0000000000062	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1386693_55	1408437.JNJN01000010_gene1241	48.5	0.00000329	N/A	N/A
PHROG	UHGV-1386693_59	phrog_14275	53.3	0.0000000000000033	N/A	unknown function
eggNOG-mapper	UHGV-1386693_59	1280676.AUJO01000001_gene2313	65.5	0.000000000603	N/A	N/A
structural_annotation	UHGV-1386693_59	PF13157,MF_01537,NF007875,COG3123	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1386693_60	1280696.ATVY01000001_gene3550	50.8	0.00000122	N/A	N/A
Pfam	UHGV-1386693_60	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-1386693_61	K07741	92.4	1.1e-26	antB; anti-repressor protein	N/A
PHROG	UHGV-1386693_61	phrog_5817	97.9	6.9e-29	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1386693_61	UniRef90_R6NBT5	203.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-1386693_61	903814.ELI_3141	134.0	1.87e-35	AntA/AntB antirepressor	N/A
Pfam	UHGV-1386693_61	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-1386693_61	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1386693_61	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
Pfam	UHGV-1386693_62	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1386693_62	PF01402,NF041284,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1386693_64	K06400	198.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1386693_64	phrog_95	188.5	0	integrase	integration and excision
UniRef90	UHGV-1386693_64	UniRef90_A0A3D4G6V8	381.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1386693_64	697329.Rumal_3466	219.0	0	resolvase	N/A
Pfam	UHGV-1386693_64	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1386693_64	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1386693_64	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1386693_64	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386693_67	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1386693_68	phrog_38	174.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1386693_68	UniRef90_UPI000419A6BC	432.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1386693_68	1121866.AUGK01000003_gene1428	432.0	0	chromosome segregation	N/A
COG	UHGV-1386693_68	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386693_68	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A