UHGV-1388085 (vOTU-022174)

Viral Genome: UHGV-1388085

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1388085
vOTU ID	vOTU-022174
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0220113
Associated BioSample	SAMEA1906443
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9648
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.08
Jumbo phage	No

Genome content
Genome length (bp)	31,572
GC content	36.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	580.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1388085_2	phrog_1863	41.1	0.0000000000054	N/A	unknown function
UniRef90	UHGV-1388085_2	UniRef90_UPI001E345E1F	62.4	0.000000000066	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1388085_2	1226322.HMPREF1545_04027	63.9	0.00000000000242	N/A	N/A
PHROG	UHGV-1388085_3	phrog_443	54.4	0.0000000000000034	holin	lysis
UniRef90	UHGV-1388085_3	UniRef90_R6MWB0	117.0	3.13e-33	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1388085_3	1235797.C816_04172	80.9	1.55e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1388085_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1388085_3	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1388085_4	K06223	228.5	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1388085_4	phrog_56	190.2	0	DNA methyltransferase	other
UniRef90	UHGV-1388085_4	UniRef90_A0A1C6HHY1	427.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-1388085_4	742733.HMPREF9469_02855	278.0	0	COG COG0338 Site-specific DNA methylase	N/A
PADLOC	UHGV-1388085_4	MTase_II_00080	132.4	4.4e-39	Type II methyltransferase	RM
Pfam	UHGV-1388085_4	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-1388085_4	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-1388085_4	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1388085_4	PF02086,MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-1388085_5	K07727	63.9	4.2e-18	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1388085_5	UniRef90_A0A413QHG2	131.0	2.32e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1388085_5	411471.SUBVAR_07446	104.0	2.24e-28	helix-turn-helix	N/A
Pfam	UHGV-1388085_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1388085_5	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1388085_5	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1388085_6	K06400	262.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1388085_6	phrog_95	264.5	0	integrase	integration and excision
UniRef90	UHGV-1388085_6	UniRef90_UPI001E5635E3	257.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1388085_6	1408424.JHYI01000021_gene28	199.0	0	Recombinase	N/A
Pfam	UHGV-1388085_6	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1388085_6	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1388085_6	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1388085_6	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1388085_9	K14059	188.6	0	int; integrase	N/A
PHROG	UHGV-1388085_9	phrog_1	164.5	0	integrase	integration and excision
UniRef90	UHGV-1388085_9	UniRef90_UPI00164B8B01	395.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1388085_9	1095750.HMPREF9970_1688	236.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1388085_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1388085_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1388085_9	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1388085_10	795955.AFRW01000079_gene238	72.4	0.0000000000276	TM2 domain	N/A
Pfam	UHGV-1388085_10	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-1388085_10	COG2314	N/A	N/A	N/A	N/A
UniRef90	UHGV-1388085_11	UniRef90_A0A374DTF3	79.3	0.00000000000000595	N/A	N/A
PHROG	UHGV-1388085_12	phrog_1914	162.9	0	N/A	unknown function
UniRef90	UHGV-1388085_12	UniRef90_UPI000E543E50	220.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1388085_12	1160721.RBI_I01604	150.0	2.46629e-43	N/A	N/A
Pfam	UHGV-1388085_12	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1388085_12	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1388085_12	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_13	phrog_2967	41.5	0.00000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-1388085_13	UniRef90_A0A374ND72	164.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1388085_13	1121115.AXVN01000006_gene2173	107.0	1.04e-27	sequence-specific DNA binding	N/A
COG	UHGV-1388085_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1388085_13	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1388085_14	UniRef90_A0A374N1V0	114.0	7.19e-32	N/A	N/A
eggNOG-mapper	UHGV-1388085_14	171693.BN988_01635	84.0	1.89e-20	N/A	N/A
Pfam	UHGV-1388085_14	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1388085_14	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1388085_14	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-1388085_15	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1388085_15	PF13443,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1388085_16	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_21	phrog_8470	256.2	0	N/A	unknown function
UniRef90	UHGV-1388085_21	UniRef90_A0A1M7BII1	161.0	2.58e-38	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1388085_21	1235790.C805_00306	160.0	1.16e-38	PcfJ-like protein	N/A
Pfam	UHGV-1388085_21	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1388085_21	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_22	phrog_15609	126.4	1e-37	N/A	unknown function
UniRef90	UHGV-1388085_22	UniRef90_A0A373SLQ6	105.0	1.97e-22	N/A	N/A
eggNOG-mapper	UHGV-1388085_22	1514668.JOOA01000001_gene225	65.5	0.00000000429	N/A	N/A
structural_annotation	UHGV-1388085_22	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_26	phrog_2118	124.7	6.7e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388085_26	UniRef90_R6QZD0	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1388085_26	610130.Closa_0730	163.0	0	HNH endonuclease	N/A
Pfam	UHGV-1388085_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1388085_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1388085_26	PF13395,TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_30	phrog_824	101.3	6.1e-30	N/A	unknown function
UniRef90	UHGV-1388085_30	UniRef90_UPI00164A50A6	182.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1388085_30	397288.C806_00096	115.0	3.31e-31	VRR_NUC	N/A
Pfam	UHGV-1388085_30	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-1388085_32	phrog_3584	143.8	1.10002e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1388085_32	1235800.C819_00515	77.8	0.0000000000000319	N/A	N/A
structural_annotation	UHGV-1388085_32	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1388085_34	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_35	phrog_119	72.8	5e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388085_35	UniRef90_A0A412ULY9	182.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1388085_35	1405.DJ92_863	87.0	6.57e-21	HNH endonuclease	N/A
Pfam	UHGV-1388085_35	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1388085_35	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1388085_36	phrog_5110	82.8	3.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1388085_36	UniRef90_UPI00057D0A7C	113.0	1.2e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1388085_36	86416.Clopa_0336	106.0	1.56e-28	N/A	N/A
Pfam	UHGV-1388085_36	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1388085_36	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_37	phrog_9	286.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1388085_37	UniRef90_A0A412UM03	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1388085_37	86416.Clopa_0337	621.0	0	Phage Terminase	N/A
Pfam	UHGV-1388085_37	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1388085_37	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1388085_37	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1388085_37	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_38	phrog_12	102.4	3.7e-30	portal protein	head and packaging
UniRef90	UHGV-1388085_38	UniRef90_A0A412ULV9	577.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1388085_38	1415774.U728_1254	269.0	0	Phage portal protein	N/A
Pfam	UHGV-1388085_38	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1388085_38	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1388085_38	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1388085_38	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1388085_39	K01358	147.8	9.66896e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1388085_39	phrog_94	215.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1388085_39	UniRef90_A0A412ULU1	384.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1388085_39	86416.Clopa_0340	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1388085_39	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1388085_39	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1388085_39	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_40	phrog_10	113.3	2.5e-33	major head protein	head and packaging
UniRef90	UHGV-1388085_40	UniRef90_A0A412ULW9	577.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1388085_40	1211817.CCAT010000053_gene2132	327.0	0	Phage capsid family	N/A
Pfam	UHGV-1388085_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1388085_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1388085_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1388085_40	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_41	phrog_749	51.5	0.000000000000015	N/A	unknown function
UniRef90	UHGV-1388085_41	UniRef90_A0A1G5CMX8	103.0	1.01e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1388085_41	349161.Dred_2603	54.7	0.0000000255	N/A	N/A
PHROG	UHGV-1388085_42	phrog_19734	65.8	6e-19	N/A	unknown function
eggNOG-mapper	UHGV-1388085_42	86416.Clopa_0343	55.1	0.0000000375	N/A	N/A
structural_annotation	UHGV-1388085_42	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1388085_43	1123315.AUIP01000001_gene1429	54.3	0.0000000652	N/A	N/A
structural_annotation	UHGV-1388085_43	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1388085_44	UniRef90_UPI000E5564A4	172.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1388085_44	1118057.CAGX01000043_gene486	65.5	0.00000000000961	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-1388085_44	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_45	phrog_88	61.6	1.3e-17	major tail protein	tail
UniRef90	UHGV-1388085_45	UniRef90_A0A1G5CNS8	174.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1388085_45	411470.RUMGNA_02319	60.5	0.0000000106	COG NOG11304 non supervised orthologous group	N/A
NCBIFam	UHGV-1388085_45	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1388085_45	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1388085_46	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1388085_48	K20282	50.2	8.8e-17	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1388085_48	phrog_1272	268.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1388085_48	UniRef90_A0A412ULX0	841.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1388085_48	588581.Cpap_1264	275.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1388085_48	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1388085_48	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1388085_48	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_49	phrog_33	66.9	5.3e-19	distal tail protein Dit	tail
UniRef90	UHGV-1388085_49	UniRef90_UPI000BB5198E	74.7	0.00000000000195	phage tail family protein	N/A
eggNOG-mapper	UHGV-1388085_49	272623.L63101	71.2	0.0000000000076	phage tail	N/A
COG	UHGV-1388085_49	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1388085_49	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1388085_50	phrog_1067	106.2	3.3e-31	minor head protein	head and packaging
UniRef90	UHGV-1388085_50	UniRef90_A0A1G5CPD2	161.0	2.41023e-42	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1388085_50	1567011.A0A0A7RUI9_9VIRU	72.0	0.0000000000851	N-acetylmuramoyl-L-alanine amidase activity	N/A
NCBIFam	UHGV-1388085_50	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1388085_50	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1388085_51	PF10651	N/A	N/A	N/A	N/A