UHGV-1388451 (vOTU-142699)

Viral Genome: UHGV-1388451

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1388451
vOTU ID	vOTU-142699
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0220366
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.86 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.1
Jumbo phage	No

Genome content
Genome length (bp)	31,615
GC content	41.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	94%
Average CDS length (bps)	677.59
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1388451_1	UniRef90_A0A374N9Y2	149.0	3.11e-40	N/A	N/A
structural_annotation	UHGV-1388451_1	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_2	phrog_1067	97.6	3.5e-29	minor head protein	head and packaging
UniRef90	UHGV-1388451_2	UniRef90_A0A1G5CPD2	150.0	7.52e-38	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1388451_2	1462527.CCDM010000003_gene3730	58.5	0.00000252	gp58-like protein	N/A
Pfam	UHGV-1388451_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1388451_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1388451_2	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1388451_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_3	phrog_33	82.5	8.6e-24	distal tail protein Dit	tail
UniRef90	UHGV-1388451_3	UniRef90_A0A1G5CPA2	137.0	7.82e-36	Phage-related protein	N/A
eggNOG-mapper	UHGV-1388451_3	1160721.RBI_I01575	93.6	4.88e-20	Phage tail protein	N/A
COG	UHGV-1388451_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1388451_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1388451_4	K20282	55.7	4.3e-17	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1388451_4	phrog_5218	271.1	0	N/A	unknown function
UniRef90	UHGV-1388451_4	UniRef90_A0A412ULX0	1658.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1388451_4	588581.Cpap_1264	203.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1388451_4	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1388451_4	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1388451_4	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1388451_5	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_6	phrog_88	72.6	5.1e-21	major tail protein	tail
UniRef90	UHGV-1388451_6	UniRef90_A0A1G5CNS8	150.0	2.0501e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1388451_6	1235790.C805_00875	62.8	0.00000000221	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1388451_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1388451_6	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1388451_7	UniRef90_UPI000E5564A4	266.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1388451_7	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1388451_7	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1388451_8	272623.L59277	50.1	0.00000236	N/A	N/A
structural_annotation	UHGV-1388451_8	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_9	phrog_19734	74.0	1.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-1388451_9	86416.Clopa_0343	61.6	0.000000000113	N/A	N/A
NCBIFam	UHGV-1388451_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1388451_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_10	phrog_749	56.0	6.1e-16	N/A	unknown function
UniRef90	UHGV-1388451_10	UniRef90_A0A1G5CMX8	108.0	7.47e-29	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1388451_10	1211817.CCAT010000053_gene2133	60.5	0.000000000146	N/A	N/A
PHROG	UHGV-1388451_11	phrog_10	129.4	3.3e-38	major head protein	head and packaging
UniRef90	UHGV-1388451_11	UniRef90_A0A412ULW9	747.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1388451_11	1211817.CCAT010000053_gene2132	325.0	0	Phage capsid family	N/A
Pfam	UHGV-1388451_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1388451_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1388451_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1388451_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1388451_12	K01358	142.0	5.4006e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1388451_12	phrog_94	211.4	0	head maturation protease	head and packaging
UniRef90	UHGV-1388451_12	UniRef90_A0A412ULU1	448.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1388451_12	86416.Clopa_0340	176.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1388451_12	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1388451_12	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1388451_12	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_13	phrog_12	90.7	1.2e-26	portal protein	head and packaging
UniRef90	UHGV-1388451_13	UniRef90_A0A412ULV9	742.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1388451_13	1415774.U728_1254	263.0	0	Phage portal protein	N/A
Pfam	UHGV-1388451_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1388451_13	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1388451_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1388451_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_14	phrog_9	290.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1388451_14	UniRef90_A0A412UM03	1037.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1388451_14	86416.Clopa_0337	618.0	0	Phage Terminase	N/A
Pfam	UHGV-1388451_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1388451_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1388451_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1388451_14	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_15	phrog_5110	82.1	4.3e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1388451_15	UniRef90_A0A4U7JDP0	113.0	1.23e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1388451_15	1211817.CCAT010000053_gene2128	99.8	6.32e-26	N/A	N/A
Pfam	UHGV-1388451_15	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1388451_15	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_16	phrog_119	67.7	1.6e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388451_16	UniRef90_A0A412ULY9	224.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1388451_16	1158607.UAU_01026	101.0	2.05e-26	HNH endonuclease	N/A
Pfam	UHGV-1388451_16	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1388451_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1388451_17	K22300	40.1	0.000000000067	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1388451_17	phrog_8	49.2	0.00000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-1388451_17	UniRef90_A0A412ULX1	137.0	4.52003e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1388451_17	226185.EF_1277	53.9	0.0000000555	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1388451_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1388451_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1388451_17	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1388451_18	PF02796,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1388451_21	K18830	51.0	0.000000000000033	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1388451_21	phrog_8	62.6	9.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1388451_21	UniRef90_A0A374N9T4	120.0	9.5e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1388451_21	717605.Theco_0106	75.9	1.03e-16	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-1388451_21	retron_type_VI_hth_cluster2_1	40.3	0.000000000088	N/A	Retron
Pfam	UHGV-1388451_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1388451_21	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1388451_21	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1388451_24	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_25	phrog_140	92.7	4.2e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388451_25	UniRef90_A0A2N0UXU6	256.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1388451_25	411462.DORLON_00806	204.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1388451_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1388451_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1388451_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1388451_26	K07505	402.7	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1388451_26	phrog_2597	1176.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388451_26	UniRef90_A0A2N0UXP7	1452.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-1388451_26	394503.Ccel_3304	962.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1388451_26	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1388451_26	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1388451_26	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1388451_26	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1388451_27	K17677	362.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1388451_27	phrog_16	297.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388451_27	UniRef90_A0A412ULZ3	1048.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1388451_27	1235798.C817_03499	837.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1388451_27	mREase_IV_00005	132.0	5e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1388451_27	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1388451_27	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1388451_27	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1388451_27	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_28	phrog_2698	176.9	0	N/A	unknown function
UniRef90	UHGV-1388451_28	UniRef90_UPI000F54335B	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-1388451_28	742723.HMPREF9477_00927	139.0	7.44e-40	N/A	N/A
structural_annotation	UHGV-1388451_28	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_29	phrog_124	265.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388451_29	UniRef90_A0A2N0UXR5	691.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-1388451_29	411462.DORLON_00811	430.0	0	AAA domain	N/A
Pfam	UHGV-1388451_29	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1388451_29	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1388451_31	K03546	57.5	1.2e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1388451_31	phrog_1499	479.4	0	N/A	unknown function
UniRef90	UHGV-1388451_31	UniRef90_A0A2N0UXU2	751.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1388451_31	645991.Sgly_0320	506.0	0	domain protein	N/A
Pfam	UHGV-1388451_31	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1388451_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1388451_31	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_35	phrog_6058	42.4	0.0000000000078	N/A	unknown function
structural_annotation	UHGV-1388451_35	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_37	phrog_585	115.0	4.6e-34	N/A	unknown function
UniRef90	UHGV-1388451_37	UniRef90_UPI00051C896C	143.0	1.32997e-41	N/A	N/A
eggNOG-mapper	UHGV-1388451_37	1033744.CAEL01000029_gene1306	128.0	4.7e-36	N/A	N/A
Pfam	UHGV-1388451_37	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1388451_37	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-1388451_39	UniRef90_UPI000E51362F	130.0	1.26e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1388451_39	411461.DORFOR_00030	51.2	0.0000000865	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1388451_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1388451_39	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_40	phrog_8	45.1	0.0000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-1388451_40	UniRef90_UPI0015F3DE1D	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1388451_40	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-1388451_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1388451_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1388451_40	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_41	phrog_1914	148.1	4.62428e-44	N/A	unknown function
UniRef90	UHGV-1388451_41	UniRef90_A0A373XNL4	354.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1388451_41	1160721.RBI_I01604	173.0	0	N/A	N/A
Pfam	UHGV-1388451_41	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1388451_41	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1388451_41	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1388451_42	phrog_4980	115.9	4.7e-36	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1388451_42	UniRef90_UPI000E52DA24	349.0	0	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1388451_42	658086.HMPREF0994_06731	96.3	2.31e-19	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1388451_42	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1388451_42	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1388451_42	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-1388451_43	K14059	102.5	6.2e-30	int; integrase	N/A
PHROG	UHGV-1388451_43	phrog_1	127.5	1.3e-37	integrase	integration and excision
UniRef90	UHGV-1388451_43	UniRef90_A0A374MXE7	792.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1388451_43	693746.OBV_41260	179.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1388451_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1388451_43	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1388451_43	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1388451_44	1321372.AQQB01000002_gene484	49.3	0.000000833	N/A	N/A