UHGV-1388768 (vOTU-131198)

Viral Genome: UHGV-1388768

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1388768
vOTU ID	vOTU-131198
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0212970
Associated BioSample	SAMEA3664490
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.3 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9754
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	2.85
Jumbo phage	No

Genome content
Genome length (bp)	30,284
GC content	37.47%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	91%
Average CDS length (bps)	503.13
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1388768_1	K07486	145.7	4.1058e-43	K07486; transposase	N/A
PHROG	UHGV-1388768_1	phrog_2199	325.8	0	transposase	integration and excision
UniRef90	UHGV-1388768_1	UniRef90_R9IQ34	796.0	0	DEDD_Tnp_IS110 domain-containing protein	N/A
eggNOG-mapper	UHGV-1388768_1	742765.HMPREF9457_03802	847.0	0	Transposase IS116/IS110/IS902 family	N/A
Pfam	UHGV-1388768_1	PF01548	N/A	N/A	Transposase	DEDD_Tnp_IS110
Pfam	UHGV-1388768_1	PF02371	N/A	N/A	Transposase IS116/IS110/IS902 family	Transposase_20
NCBIFam	UHGV-1388768_1	NF033542.1	N/A	N/A	IS110 family transposase	N/A
COG	UHGV-1388768_1	COG3547	N/A	N/A	Transposase	N/A
PHROG	UHGV-1388768_2	phrog_6616	508.1	0	tail protein	tail
UniRef90	UHGV-1388768_2	UniRef90_A0A412RR71	1524.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1388768_2	476272.RUMHYD_01992	362.0	0	N/A	N/A
Pfam	UHGV-1388768_2	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1388768_2	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1388768_3	476272.RUMHYD_01994	73.6	0.0000000000000212	N/A	N/A
eggNOG-mapper	UHGV-1388768_4	349123.Lreu23DRAFT_3172	59.3	0.00000277	N/A	N/A
PHROG	UHGV-1388768_8	phrog_3845	48.6	0.00000000000015	N/A	unknown function
KOfam	UHGV-1388768_9	K22300	58.6	1.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1388768_9	phrog_8	54.7	0.0000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-1388768_9	UniRef90_A0A412RR31	205.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1388768_9	1304866.K413DRAFT_0834	89.4	1.37e-21	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1388768_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1388768_9	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1388768_9	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1388768_10	UniRef90_A0A412RQX5	138.0	1.46996e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1388768_10	1232449.BAHV02000016_gene1846	67.8	0.000000000000582	Peptidase S24-like	N/A
Pfam	UHGV-1388768_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1388768_10	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1388768_10	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_13	phrog_8	54.5	0.0000000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-1388768_13	UniRef90_UPI001C012A29	80.5	1.22e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1388768_13	1304866.K413DRAFT_0834	62.8	0.00000000000663	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1388768_13	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1388768_13	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1388768_13	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_16	phrog_463	225.4	0	anti-repressor	transcription regulation
UniRef90	UHGV-1388768_16	UniRef90_A0A412RQX1	356.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-1388768_16	1304866.K413DRAFT_1188	169.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1388768_16	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1388768_16	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1388768_16	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1388768_16	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1388768_17	742765.HMPREF9457_03017	104.0	2.27e-24	peptidase	N/A
COG	UHGV-1388768_17	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
KOfam	UHGV-1388768_20	K19171	69.4	3.3e-20	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1388768_20	phrog_77	148.1	5.46506e-44	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388768_20	UniRef90_A0A412RQV0	899.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1388768_20	397290.C810_01461	383.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1388768_20	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1388768_20	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_23	phrog_10056	180.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388768_23	UniRef90_A0A412RR22	480.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1388768_23	397290.C810_01467	322.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-1388768_23	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1388768_23	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1388768_23	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1388768_23	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_24	phrog_25456	85.6	3.4e-25	N/A	unknown function
PHROG	UHGV-1388768_25	phrog_374	215.4	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388768_25	UniRef90_A0A0H3N242	191.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1388768_25	632245.CLP_1610	197.0	0	N/A	N/A
KOfam	UHGV-1388768_26	K06167	59.9	3.7e-17	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1388768_26	phrog_392	155.2	0	metal-dependent hydrolase	other
UniRef90	UHGV-1388768_26	UniRef90_A0A416G2C4	165.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1388768_26	1121100.JCM6294_1066	122.0	3.82e-31	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1388768_26	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1388768_26	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1388768_26	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1388768_28	K03111	110.8	1.9e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1388768_28	phrog_44	119.7	2.5e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388768_28	UniRef90_A0A1I6JG45	155.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1388768_28	622312.ROSEINA2194_04345	154.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1388768_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1388768_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1388768_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1388768_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1388768_28	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_30	phrog_20593	53.5	0.0000000000000034	N/A	unknown function
PHROG	UHGV-1388768_31	phrog_19106	236.5	0	N/A	unknown function
UniRef90	UHGV-1388768_31	UniRef90_A0A412RQV5	308.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1388768_31	658655.HMPREF0988_00875	201.0	0	N/A	N/A
structural_annotation	UHGV-1388768_31	TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_32	phrog_59	140.2	4.99983e-42	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388768_32	UniRef90_A0A173Z8S3	152.0	1.45006e-41	NUMOD4 motif	N/A
eggNOG-mapper	UHGV-1388768_32	679190.HMPREF0650_0103	132.0	7.89e-35	NUMOD4 motif	N/A
PADLOC	UHGV-1388768_32	HEase_00016	80.2	6.5e-25	homing endonuclease	RM
Pfam	UHGV-1388768_32	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1388768_32	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-1388768_33	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
UniRef90	UHGV-1388768_34	UniRef90_A0A1Y4R9D2	381.0	0	Radical SAM protein	N/A
Pfam	UHGV-1388768_34	PF13353	N/A	N/A	4Fe-4S single cluster domain	Fer4_12
COG	UHGV-1388768_34	COG2896	N/A	N/A	GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)	N/A
structural_annotation	UHGV-1388768_34	PF04055,MF_01225_A,TIGR04303,COG0535	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_36	phrog_5708	240.0	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388768_36	UniRef90_UPI001BB8B78A	321.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-1388768_36	1415774.U728_867	191.0	0	DnaD domain protein	N/A
COG	UHGV-1388768_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1388768_36	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_37	phrog_9804	175.7	0	N/A	unknown function
UniRef90	UHGV-1388768_37	UniRef90_A0A412RQW3	312.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1388768_37	1121344.JHZO01000003_gene981	146.0	1.84999e-41	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1388768_37	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1388768_37	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_42	phrog_22292	59.1	4.5e-17	N/A	unknown function
structural_annotation	UHGV-1388768_46	COG4446	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_47	phrog_10714	57.3	1.6e-16	N/A	unknown function
UniRef90	UHGV-1388768_47	UniRef90_R6RDV7	50.1	0.00000825	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-1388768_47	537007.BLAHAN_05460	49.3	0.00000282	N/A	N/A
UniRef90	UHGV-1388768_49	UniRef90_A0A843HI86	106.0	3.51e-27	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1388768_49	397290.C810_05213	124.0	9.33e-33	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-1388768_49	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1388768_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1388768_50	K00558	73.6	1.8e-21	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1388768_50	phrog_116	74.8	8.7e-22	DNA methyltransferase	other
UniRef90	UHGV-1388768_50	UniRef90_UPI001BC3B448	291.0	0	DNA (Cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1388768_50	397290.C810_05213	172.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1388768_50	MTase_II_00174	92.6	7.1e-27	Type II methyltransferase	RM
Pfam	UHGV-1388768_50	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1388768_50	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1388768_50	PF00145,TIGR00675	N/A	N/A	N/A	N/A
KOfam	UHGV-1388768_52	K00558	43.7	0.0000000000023	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1388768_52	phrog_17284	68.4	5.4e-20	N/A	unknown function
UniRef90	UHGV-1388768_52	UniRef90_A0A412KFA2	404.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1388768_52	1121115.AXVN01000007_gene3542	122.0	1.68e-28	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1388768_52	oMTase_00023	54.4	6.4e-25	orphan methyltransferase	RM
Pfam	UHGV-1388768_52	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1388768_52	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1388768_53	PF09889,MF_00649	N/A	N/A	N/A	N/A
PHROG	UHGV-1388768_54	phrog_16129	59.3	1.8e-17	excisionase	integration and excision
UniRef90	UHGV-1388768_54	UniRef90_A0A412RR26	248.0	0	HTH luxR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1388768_54	1121296.JONJ01000009_gene671	89.4	1.31e-21	Excisionase from transposon Tn916	N/A
Pfam	UHGV-1388768_54	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
Pfam	UHGV-1388768_54	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
NCBIFam	UHGV-1388768_54	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1388768_54	PF09035,PF00196,MF_00674,NF033787,NF008895,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1388768_55	K14059	251.1	0	int; integrase	N/A
PHROG	UHGV-1388768_55	phrog_1	205.1	0	integrase	integration and excision
UniRef90	UHGV-1388768_55	UniRef90_A0A412RQS9	757.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1388768_55	1235799.C818_02711	365.0	0	Phage integrase family	N/A
Pfam	UHGV-1388768_55	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-1388768_55	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1388768_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1388768_55	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1388768_55	PF00589,PF14659,PF02920,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A