UHGV-1388857 (vOTU-034131)

Viral Genome: UHGV-1388857

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1388857
vOTU ID	vOTU-034131
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0211913
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.06 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.86
Jumbo phage	No

Genome content
Genome length (bp)	30,084
GC content	55.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	96%
Average CDS length (bps)	542.72
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1388857_1	phrog_9534	122.8	3.7e-36	head protein	head and packaging
eggNOG-mapper	UHGV-1388857_1	748224.HMPREF9436_00702	90.5	6.09e-18	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1388857_1	PF21567	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_2	phrog_538	94.9	7.8e-28	minor tail protein	tail
UniRef90	UHGV-1388857_2	UniRef90_UPI001C113FEF	340.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1388857_2	931626.Awo_c34990	64.7	0.00000000988	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-1388857_2	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1388857_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_3	phrog_36410	59.8	3.3e-17	N/A	unknown function
UniRef90	UHGV-1388857_3	UniRef90_UPI001C0FCFFA	354.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1388857_3	411471.SUBVAR_06982	111.0	3.45e-26	Phage tail protein	N/A
structural_annotation	UHGV-1388857_3	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_4	phrog_23464	261.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1388857_4	665950.HMPREF1025_02660	231.0	0	phage tail tape measure protein	N/A
COG	UHGV-1388857_4	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1388857_4	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_6	phrog_885	70.9	1.4e-20	major tail protein	tail
UniRef90	UHGV-1388857_6	UniRef90_A0A843J9F0	210.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1388857_6	1504822.CCNO01000012_gene492	236.0	0	N/A	N/A
structural_annotation	UHGV-1388857_6	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1388857_7	UniRef90_A0A415JI88	89.0	2.15e-20	N/A	N/A
structural_annotation	UHGV-1388857_7	PF11367	N/A	N/A	N/A	N/A
Pfam	UHGV-1388857_8	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1388857_8	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1388857_8	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_10	phrog_267	187.5	0	major head protein	head and packaging
UniRef90	UHGV-1388857_10	UniRef90_UPI001F06E68A	263.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1388857_10	877414.ATWA01000001_gene909	258.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1388857_10	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1388857_11	UniRef90_A0A6B9SU02	89.4	1.2e-18	Fibronectin autolysin	N/A
structural_annotation	UHGV-1388857_11	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_12	phrog_5	66.3	5.7e-19	tail completion or Neck1 protein	connector
UniRef90	UHGV-1388857_12	UniRef90_UPI0015C5E40B	75.9	0.00000000000000874	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1388857_12	683837.lse_1605	61.2	0.000000000581	N/A	N/A
Pfam	UHGV-1388857_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1388857_12	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_13	phrog_35328	143.3	4.1058e-43	N/A	unknown function
PHROG	UHGV-1388857_14	phrog_2468	108.9	6e-32	head morphogenesis	head and packaging
UniRef90	UHGV-1388857_14	UniRef90_A0A4D7AUA1	340.0	0	Phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-1388857_14	1235792.C808_05364	204.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1388857_14	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1388857_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1388857_14	PF04233,PF21814,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_15	phrog_64	165.7	0	portal protein	head and packaging
UniRef90	UHGV-1388857_15	UniRef90_UPI0018A8A301	598.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1388857_15	673376.F2VHW1_9CAUD	201.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1388857_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1388857_15	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_16	phrog_38	156.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1388857_16	UniRef90_UPI00166CA12B	459.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1388857_16	1140001.I571_01829	464.0	0	N/A	N/A
structural_annotation	UHGV-1388857_16	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
KOfam	UHGV-1388857_18	K07319	118.4	6.6e-35	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1388857_18	phrog_498	438.1	0	DNA methyltransferase	other
UniRef90	UHGV-1388857_18	UniRef90_UPI0012DE0D94	433.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1388857_18	1423758.BN55_01455	430.0	0	DNA methylase	N/A
PADLOC	UHGV-1388857_18	MTase_II_00015	248.1	0	Type II methyltransferase	RM
Pfam	UHGV-1388857_18	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1388857_18	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1388857_18	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1388857_18	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_19	phrog_36	58.7	1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1388857_19	UniRef90_UPI001C10AB33	72.4	0.000000000000221	N/A	N/A
eggNOG-mapper	UHGV-1388857_19	428125.CLOLEP_01806	59.7	0.00000000341	N/A	N/A
structural_annotation	UHGV-1388857_19	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_21	phrog_4392	50.6	0.000000000000026	N/A	unknown function
PHROG	UHGV-1388857_24	phrog_22543	48.3	0.00000000000016	N/A	unknown function
UniRef90	UHGV-1388857_24	UniRef90_A0A8D9PDT5	99.4	7.42e-25	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1388857_26	phrog_9298	341.1	0	radical SAM domain protein	other
UniRef90	UHGV-1388857_26	UniRef90_A0A2Z4QA35	464.0	0	Putative radical SAM domain protein	N/A
eggNOG-mapper	UHGV-1388857_26	97138.C820_02863	343.0	0	N/A	N/A
COG	UHGV-1388857_26	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1388857_26	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_28	phrog_374	76.1	1.69978e-42	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388857_28	UniRef90_UPI000FF8D02D	107.0	3.82e-25	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1388857_28	478749.BRYFOR_05054	113.0	2.45e-27	AP2 domain protein	N/A
structural_annotation	UHGV-1388857_28	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_29	phrog_1770	106.4	2.5e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388857_29	UniRef90_A0A7W1N8Z0	113.0	3.84e-29	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-1388857_29	329726.AM1_4255	105.0	1.27e-26	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1388857_29	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-1388857_29	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_30	phrog_757	170.4	0	DNA methyltransferase	other
UniRef90	UHGV-1388857_30	UniRef90_UPI001A9BD7A0	400.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1388857_30	748224.HMPREF9436_03069	312.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1388857_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1388857_30	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1388857_31	K24213	48.2	0.00000000000011	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1388857_31	phrog_4433	62.3	3.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1388857_31	445970.ALIPUT_01221	90.5	2.02e-17	DNA-templated transcription, initiation	N/A
Pfam	UHGV-1388857_31	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1388857_31	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1388857_31	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_32	phrog_20437	168.6	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388857_32	UniRef90_A0A3A6E2X3	258.0	0	N/A	N/A
eggNOG-mapper	UHGV-1388857_32	1511.CLOST_1549	172.0	0	N/A	N/A
Pfam	UHGV-1388857_32	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1388857_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1388857_32	PF14297,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-1388857_33	K03111	129.7	3.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1388857_33	phrog_44	121.0	9.9e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388857_33	UniRef90_A0A1W1YRF9	137.0	5.45e-39	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1388857_33	1007096.BAGW01000023_gene151	130.0	3.38e-37	Single-strand binding protein family	N/A
Pfam	UHGV-1388857_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1388857_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1388857_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1388857_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1388857_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_34	phrog_7370	66.5	3.1e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388857_34	UniRef90_UPI000933A555	136.0	1.53e-39	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1388857_34	1232449.BAHV02000016_gene1841	82.4	5.56e-19	HNH nucleases	N/A
Pfam	UHGV-1388857_34	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-1388857_35	phrog_59	132.8	1.2e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388857_35	UniRef90_A0A2T3EXE0	130.0	5.31e-35	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1388857_35	767806.D7PQ37_9CAUD	117.0	1.12e-30	HNH endonuclease	N/A
PADLOC	UHGV-1388857_35	HEase_00016	102.6	7.2e-30	homing endonuclease	RM
Pfam	UHGV-1388857_35	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1388857_35	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1388857_35	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_36	phrog_72	50.8	0.000000000000029	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388857_36	UniRef90_UPI001F3F3E5C	102.0	1.46e-24	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1388857_36	1507.HMPREF0262_00432	104.0	4.84e-26	N/A	N/A
structural_annotation	UHGV-1388857_36	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1388857_37	phrog_155	83.8	2.3e-24	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1388857_37	UniRef90_UPI0018AC33A4	192.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1388857_37	1497679.EP56_08440	78.2	0.00000000000000557	ERF superfamily	N/A
Pfam	UHGV-1388857_37	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1388857_37	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1388857_49	K22300	74.6	1.6e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1388857_49	phrog_8	58.5	1.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1388857_49	UniRef90_A0A2U1BEG8	105.0	7.32e-27	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1388857_49	887325.HMPREF0381_0352	99.8	2.74e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1388857_49	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1388857_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1388857_51	UniRef90_A0A841Z1U4	84.3	1.61e-17	N/A	N/A
eggNOG-mapper	UHGV-1388857_51	655812.HMPREF0061_0218	94.4	4.31e-22	N/A	N/A
Pfam	UHGV-1388857_51	PF16729	N/A	N/A	N/A	DUF5067
COG	UHGV-1388857_51	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
eggNOG-mapper	UHGV-1388857_53	428127.EUBDOL_00130	53.9	0.000000201	sequence-specific DNA binding	N/A
COG	UHGV-1388857_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A