UHGV-1389251 (vOTU-110464)

Viral Genome: UHGV-1389251

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1389251
vOTU ID	vOTU-110464
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0212621
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9784
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.21
Jumbo phage	No

Genome content
Genome length (bp)	30,215
GC content	34.96%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	88%
Average CDS length (bps)	443.90
Total tRNA genes	2
Suppressor tRNA genes	1

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1389251_1	phrog_21084	97.3	1.4e-28	recombinase	other
UniRef90	UHGV-1389251_1	UniRef90_A0A8D9PGW5	423.0	0	Chromosome partition protein	N/A
eggNOG-mapper	UHGV-1389251_1	796940.HMPREF9628_00171	95.1	1.59e-18	nuclear chromosome segregation	N/A
COG	UHGV-1389251_1	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1389251_1	PF05546,MF_00449,NF003034,COG1340	N/A	N/A	N/A	N/A
PHROG	UHGV-1389251_2	phrog_2164	63.1	4.4e-18	N/A	unknown function
PHROG	UHGV-1389251_3	phrog_10056	179.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1389251_3	UniRef90_A0A412RR22	444.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1389251_3	397290.C810_01467	327.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-1389251_3	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1389251_3	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1389251_3	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1389251_3	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1389251_4	phrog_25456	76.5	3e-22	N/A	unknown function
PHROG	UHGV-1389251_5	phrog_392	106.2	4.2e-31	metal-dependent hydrolase	other
UniRef90	UHGV-1389251_5	UniRef90_A0A412RQX2	311.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1389251_5	1232453.BAIF02000057_gene1138	110.0	2.05e-28	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
COG	UHGV-1389251_5	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1389251_5	PF02112,MF_00457,NF041851,COG2220	N/A	N/A	N/A	N/A
PHROG	UHGV-1389251_6	phrog_7711	150.1	5.60519e-45	N/A	unknown function
UniRef90	UHGV-1389251_6	UniRef90_UPI001C38CAD2	112.0	1.67e-28	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1389251_6	1226322.HMPREF1545_00031	153.0	0	N/A	N/A
eggNOG-mapper	UHGV-1389251_7	1235790.C805_00035	53.9	0.000000112	N/A	N/A
eggNOG-mapper	UHGV-1389251_8	397288.C806_00098	75.1	0.00000000000000353	N/A	N/A
PHROG	UHGV-1389251_10	phrog_20891	72.5	5.7e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1389251_10	UniRef90_UPI0013794BCD	197.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1389251_10	864702.OsccyDRAFT_0645	63.9	0.000000000266	HNH endonuclease	N/A
Pfam	UHGV-1389251_10	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1389251_10	PF13392	N/A	N/A	N/A	N/A
KOfam	UHGV-1389251_11	K03111	118.8	7.9e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1389251_11	phrog_44	128.4	5.8e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1389251_11	UniRef90_A0A412RR48	264.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1389251_11	397290.C810_01495	184.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1389251_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1389251_11	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1389251_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1389251_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1389251_11	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1389251_12	phrog_10714	43.2	0.0000000000033	N/A	unknown function
UniRef90	UHGV-1389251_12	UniRef90_R5R2P7	94.0	5.44e-22	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-1389251_12	537007.BLAHAN_05460	110.0	2.33e-29	N/A	N/A
PHROG	UHGV-1389251_14	phrog_19106	345.1	0	N/A	unknown function
UniRef90	UHGV-1389251_14	UniRef90_R6RVQ6	301.0	0	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-1389251_14	658655.HMPREF0988_00875	242.0	0	N/A	N/A
structural_annotation	UHGV-1389251_14	TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-1389251_17	K07319	51.8	0.000000000000013	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1389251_17	phrog_67	48.9	0.00000000000011	DNA methyltransferase	other
eggNOG-mapper	UHGV-1389251_17	357804.Ping_0705	50.4	0.00000849	Belongs to the N(4) N(6)-methyltransferase family	N/A
COG	UHGV-1389251_17	COG0863	N/A	N/A	DNA modification methylase	N/A
KOfam	UHGV-1389251_18	K00571	99.2	5.7e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1389251_18	phrog_67	91.9	3.2e-28	DNA methyltransferase	other
UniRef90	UHGV-1389251_18	UniRef90_A0A1G5ET13	166.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1389251_18	1122243.KB903771_gene1539	120.0	2.74e-32	DNA methylase	N/A
PADLOC	UHGV-1389251_18	MTase_II_00157	97.8	9e-29	Type II methyltransferase	RM
Pfam	UHGV-1389251_18	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1389251_18	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-1389251_19	phrog_757	69.5	3.7e-20	DNA methyltransferase	other
eggNOG-mapper	UHGV-1389251_19	658655.HMPREF0988_00884	267.0	0	N/A	N/A
AcrCatalog	UHGV-1389251_19	cluster_47493	177.0	0	NA	N/A
structural_annotation	UHGV-1389251_19	PF00145,MF_00341,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1389251_21	phrog_2514	80.1	2.1e-23	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1389251_21	UniRef90_A0A174WT25	120.0	4.87e-29	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-1389251_21	1120998.AUFC01000013_gene2941	153.0	3.68541e-43	N/A	N/A
structural_annotation	UHGV-1389251_21	PF09681,MF_01177,TIGR01714,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1389251_23	phrog_9804	162.8	0	N/A	unknown function
UniRef90	UHGV-1389251_23	UniRef90_A0A292SPH8	407.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1389251_23	626523.GCWU000342_01038	136.0	3.98e-37	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1389251_23	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1389251_23	PF11417	N/A	N/A	N/A	N/A
UniRef90	UHGV-1389251_24	UniRef90_A0A8D9UJ07	106.0	7.6e-25	Restriction endonuclease	N/A
UniRef90	UHGV-1389251_27	UniRef90_UPI001D05EDA5	84.0	6.79e-20	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-1389251_27	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-1389251_27	PF00196,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1389251_29	K06400	286.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1389251_29	phrog_95	288.0	0	integrase	integration and excision
UniRef90	UHGV-1389251_29	UniRef90_UPI001D084942	713.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1389251_29	246199.CUS_6803	265.0	0	N/A	N/A
Pfam	UHGV-1389251_29	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1389251_29	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1389251_29	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1389251_29	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1389251_31	658655.HMPREF0988_00919	110.0	3.96e-28	N/A	N/A
structural_annotation	UHGV-1389251_31	NF033819	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1389251_32	658655.HMPREF0988_00918	80.5	4.32e-19	N/A	N/A
PHROG	UHGV-1389251_33	phrog_16490	188.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1389251_33	397290.C810_01328	182.0	0	N/A	N/A
PHROG	UHGV-1389251_34	phrog_20016	163.4	0	N/A	unknown function
UniRef90	UHGV-1389251_34	UniRef90_A0A2Z4QB67	137.0	8.69e-39	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1389251_34	1235790.C805_00062	172.0	0	N/A	N/A
structural_annotation	UHGV-1389251_34	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1389251_35	phrog_3180	45.3	0.0000000000011	Arc-like repressor	transcription regulation
UniRef90	UHGV-1389251_35	UniRef90_D7GWE6	61.2	0.0000000000329	RHH_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1389251_35	476272.RUMHYD_01909	46.2	0.00000614	Ribbon-helix-helix domain	N/A
Pfam	UHGV-1389251_35	PF12651	N/A	N/A	Ribbon-helix-helix domain	RHH_3
structural_annotation	UHGV-1389251_35	PF12651,NF041793,COG3905	N/A	N/A	N/A	N/A
PHROG	UHGV-1389251_36	phrog_374	198.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1389251_36	UniRef90_A0A7W0C2S3	186.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-1389251_36	673376.F2VHW3_9CAUD	188.0	0	sequence-specific DNA binding transcription factor activity	N/A
eggNOG-mapper	UHGV-1389251_37	658655.HMPREF0988_00915	106.0	1.01e-25	N/A	N/A
PHROG	UHGV-1389251_38	phrog_1233	60.3	3.6e-17	N/A	unknown function
UniRef90	UHGV-1389251_38	UniRef90_A0A345BPX6	87.4	3e-20	Metal-dependent hydrolase	N/A
eggNOG-mapper	UHGV-1389251_38	658655.HMPREF0988_00914	95.9	2.59e-24	N/A	N/A
PHROG	UHGV-1389251_40	phrog_10678	47.4	0.000000000000043	N/A	unknown function
eggNOG-mapper	UHGV-1389251_42	1235800.C819_00521	55.8	0.0000000302	N/A	N/A
structural_annotation	UHGV-1389251_42	PF09392,NF011854	N/A	N/A	N/A	N/A
KOfam	UHGV-1389251_43	K07727	58.9	1.5e-16	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1389251_43	UniRef90_A0A415M7P1	139.0	1.46996e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1389251_43	411470.RUMGNA_00075	103.0	3.8e-28	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1389251_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1389251_43	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1389251_46	UniRef90_A0A8D9UIS5	149.0	3.11999e-41	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1389251_46	658655.HMPREF0988_00895	139.0	2.16e-39	N/A	N/A
PHROG	UHGV-1389251_47	phrog_374	174.0	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1389251_47	UniRef90_A0A3Q9RLP4	156.0	7.54039e-42	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	N/A
eggNOG-mapper	UHGV-1389251_47	673376.F2VHW3_9CAUD	162.0	1.4013e-45	sequence-specific DNA binding transcription factor activity	N/A
structural_annotation	UHGV-1389251_47	PF12647	N/A	N/A	N/A	N/A
UniRef90	UHGV-1389251_48	UniRef90_UPI000F53660B	49.7	0.00000075	ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-1389251_48	PF19807	N/A	N/A	N/A	DUF6290
PHROG	UHGV-1389251_50	phrog_6969	73.8	3.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1389251_50	1232446.BAIE02000002_gene816	99.8	5.21e-22	N/A	N/A
structural_annotation	UHGV-1389251_50	PF07106,NF040642,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-1389251_52	UniRef90_A0A8D9PGW1	127.0	1.82e-37	HTH psq-type domain-containing protein	N/A
structural_annotation	UHGV-1389251_52	PF05225,COG2886	N/A	N/A	N/A	N/A
PHROG	UHGV-1389251_55	phrog_28328	43.7	0.0000000000037	N/A	unknown function
PHROG	UHGV-1389251_59	phrog_478	125.3	2.8e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1389251_59	UniRef90_A0A373Q857	122.0	8.65e-33	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1389251_59	1111121.HMPREF1247_0834	105.0	1.41e-27	N/A	N/A
PHROG	UHGV-1389251_60	phrog_38	165.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1389251_60	UniRef90_A0A8D9UIV2	659.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1389251_60	397290.C810_01390	812.0	0	chromosome segregation	N/A
COG	UHGV-1389251_60	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1389251_60	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A