UHGV-1390414 (vOTU-040326)

Viral Genome: UHGV-1390414

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1390414
vOTU ID	vOTU-040326
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0213813
Associated BioSample	SAMEA4378249
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.73 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.14
Jumbo phage	No

Genome content
Genome length (bp)	30,443
GC content	39.00%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	88%
Average CDS length (bps)	584.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1390414_1	K06909	262.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1390414_1	phrog_3717	156.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1390414_1	UniRef90_A0A395X9V4	606.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1390414_1	397291.C804_01612	332.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1390414_1	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1390414_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1390414_1	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_2	phrog_606	92.4	5.2e-27	terminase small subunit	head and packaging
UniRef90	UHGV-1390414_2	UniRef90_UPI00195648BB	173.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1390414_2	397290.C810_05185	174.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-1390414_2	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1390414_2	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390414_3	411459.RUMOBE_01385	50.1	0.00000148	N/A	N/A
AcrCatalog	UHGV-1390414_3	cluster_11670	78.2	6.1e-22	NA	N/A
PHROG	UHGV-1390414_4	phrog_10714	42.8	0.0000000000067	N/A	unknown function
PHROG	UHGV-1390414_6	phrog_7711	128.3	3.2e-38	N/A	unknown function
UniRef90	UHGV-1390414_6	UniRef90_A0A0N7JDH6	114.0	3.16e-30	N/A	N/A
eggNOG-mapper	UHGV-1390414_6	189425.PGRAT_24145	99.8	3.28e-25	N/A	N/A
PHROG	UHGV-1390414_8	phrog_8684	111.9	2.6e-33	N/A	unknown function
UniRef90	UHGV-1390414_8	UniRef90_A0A3A6GQT2	168.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1390414_8	457412.RSAG_01162	92.4	9.48e-22	YopX protein	N/A
Pfam	UHGV-1390414_8	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1390414_8	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1390414_8	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1390414_9	UniRef90_A0A395XB56	113.0	7.19e-30	N/A	N/A
PHROG	UHGV-1390414_13	phrog_7070	123.7	5.1e-37	N/A	unknown function
eggNOG-mapper	UHGV-1390414_13	1195072.M4HPW0_9CAUD	94.0	3.19e-24	N/A	N/A
KOfam	UHGV-1390414_14	K19779	54.1	0.0000000000000022	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-1390414_14	phrog_599	59.2	1e-16	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1390414_14	UniRef90_A0A317UED7	114.0	7.3e-32	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1390414_14	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1390414_14	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1390414_14	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1390414_14	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1390414_16	UniRef90_A0A373P4I4	63.9	0.0000000000145	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1390414_16	PF12840	N/A	N/A	Helix-turn-helix domain	HTH_20
structural_annotation	UHGV-1390414_16	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_18	phrog_17690	136.5	7.69999e-41	N/A	unknown function
eggNOG-mapper	UHGV-1390414_18	476272.RUMHYD_03925	196.0	0	N/A	N/A
KOfam	UHGV-1390414_20	K15255	244.9	0	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	N/A
PHROG	UHGV-1390414_20	phrog_325	262.8	0	Dda-like helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390414_20	UniRef90_A0A2V2D011	880.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1390414_20	1504823.CCMM01000005_gene215	268.0	0	Caulimovirus viroplasmin	N/A
PADLOC	UHGV-1390414_20	cluster10	54.7	1.5e-18	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-1390414_20	PF05970	N/A	N/A	PIF1-like helicase	PIF1
COG	UHGV-1390414_20	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1390414_20	PF05970,PF16277,MF_03176,TIGR01448,COG0507	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_21	phrog_8841	490.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390414_21	UniRef90_A0A3A6GQS5	1140.0	0	N/A	N/A
eggNOG-mapper	UHGV-1390414_21	411460.RUMTOR_02070	528.0	0	N/A	N/A
Pfam	UHGV-1390414_21	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1390414_21	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1390414_21	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390414_21	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1390414_22	K02316	77.2	2.4e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1390414_22	phrog_11992	129.2	3.4e-38	N/A	unknown function
UniRef90	UHGV-1390414_22	UniRef90_A0A3A6GSV7	318.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1390414_22	411460.RUMTOR_02069	126.0	1.05e-34	CHC2 zinc finger	N/A
PADLOC	UHGV-1390414_22	drt-UG29	45.2	0.00000000000074	DRT	DRT
Pfam	UHGV-1390414_22	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1390414_22	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1390414_22	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_23	phrog_3490	155.1	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390414_23	UniRef90_R9KEE1	258.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1390414_23	1256908.HMPREF0373_00660	261.0	0	N/A	N/A
Pfam	UHGV-1390414_23	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1390414_23	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_24	phrog_18107	241.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1390414_24	397290.C810_05167	214.0	0	N/A	N/A
structural_annotation	UHGV-1390414_24	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_25	phrog_2872	171.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390414_25	UniRef90_UPI0015715A02	281.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1390414_25	1256908.HMPREF0373_00658	252.0	0	AAA domain	N/A
structural_annotation	UHGV-1390414_25	TIGR01618	N/A	N/A	N/A	N/A
UniRef90	UHGV-1390414_26	UniRef90_R6RDX0	76.6	4.32e-17	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-1390414_27	NF011879	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_33	phrog_5070	159.5	0	N/A	unknown function
UniRef90	UHGV-1390414_33	UniRef90_A0A285PUH1	139.0	1.18e-37	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-1390414_33	411470.RUMGNA_02189	105.0	9.19e-26	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1390414_33	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1390414_33	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
KOfam	UHGV-1390414_38	K18830	43.4	0.0000000000038	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1390414_38	phrog_4	42.5	0.000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-1390414_38	UniRef90_A0A2V2D6D5	166.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1390414_38	1235790.C805_00012	103.0	6.11e-27	Helix-turn-helix domain	N/A
Pfam	UHGV-1390414_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1390414_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1390414_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_40	phrog_215	51.8	0.00000000000001	structural protein with Ig domain	head and packaging
eggNOG-mapper	UHGV-1390414_40	180332.JTGN01000005_gene2952	105.0	5.53e-21	domain, Protein	N/A
Pfam	UHGV-1390414_40	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1390414_40	COG2382	N/A	N/A	Enterochelin esterase or related enzyme	N/A
KOfam	UHGV-1390414_41	K06400	294.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1390414_41	phrog_95	330.3	0	integrase	integration and excision
UniRef90	UHGV-1390414_41	UniRef90_A0A2V2D7K6	996.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1390414_41	33035.JPJF01000109_gene439	678.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1390414_41	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1390414_41	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1390414_41	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1390414_41	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1390414_41	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_42	phrog_38078	53.6	1.2e-16	N/A	unknown function
UniRef90	UHGV-1390414_42	UniRef90_UPI0009315CF1	489.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1390414_42	476272.RUMHYD_01851	219.0	0	Putative peptidoglycan binding domain	N/A
Pfam	UHGV-1390414_42	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1390414_42	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1390414_42	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1390414_42	PF08239,PF09953,NF040678,COG3942,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_44	phrog_6616	475.9	0	tail protein	tail
UniRef90	UHGV-1390414_44	UniRef90_A0A2V2D052	2575.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1390414_44	1121866.AUGK01000003_gene1439	262.0	0	Phage minor structural protein	N/A
COG	UHGV-1390414_44	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1390414_44	PF05113,PF03921,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390414_45	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1390414_46	phrog_1535	408.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1390414_46	UniRef90_A0A173R880	413.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1390414_46	476272.RUMHYD_01785	411.0	0	phage tail tape measure protein	N/A
COG	UHGV-1390414_46	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390414_46	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A