UHGV-1390587 (vOTU-034169)

Viral Genome: UHGV-1390587

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1390587
vOTU ID	vOTU-034169
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0308109
Associated BioSample	SAMN00040800
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.34 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.36
Jumbo phage	No

Genome content
Genome length (bp)	49,249
GC content	39.89%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	86
CDS density	88%
Average CDS length (bps)	504.94
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1390587_2	phrog_954	219.4	0	DNA methyltransferase	other
UniRef90	UHGV-1390587_2	UniRef90_A0A413RZZ9	248.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-1390587_2	1141106.CAIB01000118_gene949	225.0	0	methyltransferase	N/A
PADLOC	UHGV-1390587_2	MTase_II_00074	212.4	0	Type II methyltransferase	RM
Pfam	UHGV-1390587_2	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1390587_2	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1390587_2	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_5	phrog_20593	49.2	0.000000000000072	N/A	unknown function
eggNOG-mapper	UHGV-1390587_6	397290.C810_05186	102.0	1.87e-26	N/A	N/A
PHROG	UHGV-1390587_7	phrog_21026	52.8	0.0000000000000065	N/A	unknown function
KOfam	UHGV-1390587_10	K02314	309.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1390587_10	phrog_19	291.5	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390587_10	UniRef90_A0A173RD23	845.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1390587_10	1298920.KI911353_gene2061	362.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1390587_10	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1390587_10	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1390587_10	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1390587_10	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_11	phrog_11769	193.6	0	N/A	unknown function
UniRef90	UHGV-1390587_11	UniRef90_A0A173RDT0	495.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-1390587_11	536232.CLM_1634	188.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1390587_11	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1390587_11	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1390587_11	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_12	phrog_19106	314.3	0	N/A	unknown function
UniRef90	UHGV-1390587_12	UniRef90_A0A173RDE6	370.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-1390587_12	658655.HMPREF0988_00875	275.0	0	N/A	N/A
Pfam	UHGV-1390587_12	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-1390587_12	TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-1390587_14	K06167	69.3	2.7e-20	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1390587_14	phrog_392	203.4	0	metal-dependent hydrolase	other
UniRef90	UHGV-1390587_14	UniRef90_A0A173REW9	471.0	0	Beta-lactamase superfamily domain	N/A
eggNOG-mapper	UHGV-1390587_14	1144313.PMI10_00501	192.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1390587_14	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1390587_14	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1390587_14	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_15	phrog_25456	76.9	2.2e-22	N/A	unknown function
PHROG	UHGV-1390587_16	phrog_2185	322.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390587_16	UniRef90_UPI00157154DF	481.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1390587_16	1232453.BAIF02000057_gene1136	452.0	0	N/A	N/A
structural_annotation	UHGV-1390587_16	NF007351,COG3723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390587_19	1232453.BAIF02000057_gene1135	68.2	0.00000000000112	N/A	N/A
PHROG	UHGV-1390587_21	phrog_19610	96.6	2.1e-28	N/A	unknown function
KOfam	UHGV-1390587_22	K19171	51.9	0.0000000000000031	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1390587_22	phrog_77	155.5	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390587_22	UniRef90_A0A413Z5U6	543.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1390587_22	1232453.BAIF02000057_gene1134	496.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1390587_22	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1390587_22	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_23	phrog_26861	94.9	2.1e-28	N/A	unknown function
UniRef90	UHGV-1390587_23	UniRef90_A0A173RCS5	350.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1390587_23	483218.BACPEC_01931	110.0	3.9e-27	Single-strand binding protein family	N/A
Pfam	UHGV-1390587_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1390587_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1390587_23	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_28	phrog_32192	78.9	5e-23	N/A	unknown function
UniRef90	UHGV-1390587_28	UniRef90_UPI001D0221FF	206.0	0	alanine-zipper protein	N/A
Pfam	UHGV-1390587_28	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
PHROG	UHGV-1390587_29	phrog_4608	149.4	1.82169e-44	anti-repressor	transcription regulation
UniRef90	UHGV-1390587_29	UniRef90_UPI001D00AF42	456.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-1390587_29	926561.KB900622_gene670	183.0	0	ORF6N domain	N/A
Pfam	UHGV-1390587_29	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-1390587_29	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1390587_29	PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-1390587_32	K22300	52.1	0.000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1390587_32	UniRef90_A0A412ELD4	111.0	8.19e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1390587_32	469609.HMPREF0847_00376	53.5	0.0000000999	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1390587_32	retron_type_VI_hth_cluster2_1	42.7	0.000000000016	N/A	Retron
Pfam	UHGV-1390587_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1390587_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1390587_32	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_33	phrog_2967	60.3	2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1390587_33	UniRef90_A0A416SLU4	130.0	9.92e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1390587_33	476272.RUMHYD_03305	87.8	1.63e-19	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1390587_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1390587_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1390587_33	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1390587_35	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1390587_35	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390587_36	610130.Closa_0760	62.8	0.0000000000717	N/A	N/A
PHROG	UHGV-1390587_39	phrog_17196	119.7	7.5e-36	kinase	other
eggNOG-mapper	UHGV-1390587_39	483218.BACPEC_01141	182.0	0	N/A	N/A
structural_annotation	UHGV-1390587_39	PF19537,PF13619,COG3536	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_40	phrog_18190	483.2	0	N/A	unknown function
UniRef90	UHGV-1390587_40	UniRef90_A0A173UFM3	1346.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1390587_40	397290.C810_05239	295.0	0	N/A	N/A
Pfam	UHGV-1390587_40	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1390587_40	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_41	phrog_1194	46.6	0.00000000000048	N/A	unknown function
Pfam	UHGV-1390587_41	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1390587_41	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_42	phrog_130	139.0	3.59994e-41	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1390587_42	UniRef90_UPI0009D7969F	235.0	0	transporter	N/A
eggNOG-mapper	UHGV-1390587_42	1443125.Z962_p0009	201.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1390587_42	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1390587_42	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1390587_42	PF02498,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-1390587_43	UniRef90_A0A173UG14	575.0	0	BIG2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1390587_43	1410624.JNKK01000088_gene2110	68.9	0.000000000113	Bacterial Ig-like domain (group 2)	N/A
structural_annotation	UHGV-1390587_43	PF02368,PF07233,NF038353,NF005261	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_44	phrog_1535	160.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1390587_44	UniRef90_A0A173UHS1	953.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1390587_44	1232443.BAIA02000078_gene18	81.6	0.000000000000752	phage tail tape measure protein	N/A
COG	UHGV-1390587_44	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_45	phrog_7168	77.8	4.1e-23	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390587_45	UniRef90_A0A173UI60	595.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-1390587_45	745718.JADT01000019_gene1515	84.7	1.11e-16	Intron encoded nuclease repeat motif	N/A
Pfam	UHGV-1390587_45	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-1390587_45	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
NCBIFam	UHGV-1390587_45	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-1390587_45	PF07453,PF19835,PF04936,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_46	phrog_1535	66.5	2e-19	tail length tape measure protein	tail
UniRef90	UHGV-1390587_46	UniRef90_A0A173UI54	653.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1390587_46	1408437.JNJN01000010_gene1238	149.0	3.5e-37	domain protein	N/A
COG	UHGV-1390587_46	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_47	phrog_14030	131.2	6.5e-39	N/A	unknown function
UniRef90	UHGV-1390587_47	UniRef90_A0A3R6ARM6	210.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1390587_47	1235793.C809_02691	170.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1390587_47	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
UniRef90	UHGV-1390587_50	UniRef90_A0A8D9PGN2	182.0	0	Major tail protein	N/A
structural_annotation	UHGV-1390587_50	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390587_51	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390587_52	1298920.KI911353_gene2654	175.0	0	N/A	N/A
AcrCatalog	UHGV-1390587_52	cluster_24841	91.3	3.86e-25	NA	N/A
structural_annotation	UHGV-1390587_53	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_54	phrog_443	55.0	0.0000000000000023	holin	lysis
UniRef90	UHGV-1390587_54	UniRef90_UPI000BA3B743	99.8	3.36e-26	holin	N/A
eggNOG-mapper	UHGV-1390587_54	411490.ANACAC_00704	88.2	1.96e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1390587_54	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1390587_54	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_55	phrog_4105	84.3	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1390587_55	411459.RUMOBE_00911	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-1390587_56	397290.C810_01402	63.5	0.0000000000255	N/A	N/A
PHROG	UHGV-1390587_57	phrog_774	60.8	3e-17	N/A	unknown function
eggNOG-mapper	UHGV-1390587_57	397290.C810_05225	139.0	3.59013e-42	N/A	N/A
UniRef90	UHGV-1390587_58	UniRef90_A0A416G2T8	65.9	0.00000000000188	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1390587_58	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_59	phrog_29	162.5	0	major head protein	head and packaging
UniRef90	UHGV-1390587_59	UniRef90_UPI001D02C54B	692.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1390587_59	1298920.KI911353_gene2660	343.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1390587_59	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1390587_59	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_60	phrog_909	48.6	0.00000000000013	major head protein	head and packaging
eggNOG-mapper	UHGV-1390587_60	1298920.KI911353_gene2661	124.0	3.27e-35	N/A	N/A
UniRef90	UHGV-1390587_61	UniRef90_R6C0B6	127.0	1.63e-33	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1390587_62	phrog_64	173.4	0	portal protein	head and packaging
UniRef90	UHGV-1390587_62	UniRef90_A0A173UGW9	946.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-1390587_62	1298920.KI911353_gene2663	449.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1390587_62	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1390587_62	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_63	phrog_36	67.6	2.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1390587_63	UniRef90_A0A410QFZ6	86.7	5.36e-19	N/A	N/A
eggNOG-mapper	UHGV-1390587_63	994573.T472_0211085	78.2	1.96e-16	sigma factor activity	N/A
COG	UHGV-1390587_63	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1390587_63	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1390587_64	phrog_38	145.1	4.69435e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1390587_64	UniRef90_A0A8D9PG33	744.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1390587_64	1232453.BAIF02000058_gene1623	421.0	0	TIGRFAM Phage	N/A
COG	UHGV-1390587_64	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390587_64	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390587_68	PF04466	N/A	N/A	N/A	N/A
UniRef90	UHGV-1390587_72	UniRef90_UPI001D011ACB	84.0	3.82e-19	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-1390587_72	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
eggNOG-mapper	UHGV-1390587_74	411473.RUMCAL_02525	96.3	3.07e-24	N/A	N/A
PHROG	UHGV-1390587_75	phrog_229	114.4	6.2e-34	MazG-like pyrophosphatase	other
UniRef90	UHGV-1390587_75	UniRef90_UPI001D02B1F9	272.0	0	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-1390587_75	428125.CLOLEP_01391	102.0	3.04e-26	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1390587_75	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1390587_75	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1390587_75	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
Pfam	UHGV-1390587_76	PF10957	N/A	N/A	Sporulation protein Cse60	Spore_Cse60
structural_annotation	UHGV-1390587_76	PF10750,MF_00508,TIGR00166	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390587_77	658655.HMPREF0988_00895	69.7	0.00000000000207	N/A	N/A
structural_annotation	UHGV-1390587_78	PF19923	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390587_81	411470.RUMGNA_03786	89.4	2.6e-21	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1390587_81	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1390587_83	UniRef90_UPI001D008199	157.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1390587_83	877411.JMMA01000002_gene1483	53.5	0.0000000176	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1390587_83	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1390587_83	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390587_85	PF20593	N/A	N/A	N/A	N/A