UHGV-1390702 (vOTU-086868)

Viral Genome: UHGV-1390702

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1390702
vOTU ID	vOTU-086868
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0218596
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.87 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9727
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.15
Jumbo phage	No

Genome content
Genome length (bp)	31,312
GC content	40.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	94%
Average CDS length (bps)	565.10
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1390702_1	phrog_443	55.1	0.000000000000002	holin	lysis
UniRef90	UHGV-1390702_1	UniRef90_UPI001F4B569B	90.9	1.38e-22	holin	N/A
eggNOG-mapper	UHGV-1390702_1	1321814.HMPREF9089_00942	88.2	3.45e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1390702_1	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1390702_1	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1390702_2	K01448	58.7	9.1e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1390702_2	phrog_435	79.8	2.5e-23	endolysin	lysis
UniRef90	UHGV-1390702_2	UniRef90_R6F327	258.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1390702_2	641107.CDLVIII_3773	138.0	1.42e-35	heme binding	N/A
Pfam	UHGV-1390702_2	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1390702_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1390702_2	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1390702_2	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390702_3	1232452.BAIB02000007_gene1606	51.2	0.0000015	N/A	N/A
PHROG	UHGV-1390702_4	phrog_8887	61.2	1.1e-17	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1390702_4	UniRef90_UPI001D9BC961	136.0	3.48e-40	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-1390702_4	633697.EubceDRAFT1_2398	109.0	2.83e-30	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1390702_4	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
structural_annotation	UHGV-1390702_4	COG1724	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_5	phrog_9151	135.3	2.29999e-40	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1390702_5	UniRef90_UPI001EDDC109	196.0	0	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-1390702_5	33035.JPJF01000090_gene99	184.0	0	HicB family	N/A
Pfam	UHGV-1390702_5	PF05534	N/A	N/A	HicB family	HicB
COG	UHGV-1390702_5	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
structural_annotation	UHGV-1390702_5	PF05534,NF041793,COG4226	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390702_6	633697.EubceDRAFT1_2400	102.0	8.62e-26	N/A	N/A
structural_annotation	UHGV-1390702_6	PF02556,MF_00821,NF004391,COG1952	N/A	N/A	N/A	N/A
KOfam	UHGV-1390702_7	K06400	310.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1390702_7	phrog_95	321.6	0	integrase	integration and excision
UniRef90	UHGV-1390702_7	UniRef90_A0A8J7W0X7	362.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1390702_7	1120998.AUFC01000013_gene2937	360.0	0	N/A	N/A
Pfam	UHGV-1390702_7	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1390702_7	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1390702_7	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1390702_7	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1390702_7	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_8	phrog_4980	109.8	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1390702_8	1507.HMPREF0262_00674	76.6	0.00000000000136	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1390702_8	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
structural_annotation	UHGV-1390702_8	PF18933,PF02631,MF_02248,MF_01114,NF008627,NF001062,COG5435,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-1390702_9	K14623	376.8	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-1390702_9	phrog_8036	368.9	0	N/A	unknown function
UniRef90	UHGV-1390702_9	UniRef90_A0A3R7C578	375.0	0	DNA damage-inducible protein D	N/A
eggNOG-mapper	UHGV-1390702_9	411461.DORFOR_00036	362.0	0	BRO family, N-terminal domain	N/A
AcrCatalog	UHGV-1390702_9	cluster_17589	157.0	0	NA	N/A
PADLOC	UHGV-1390702_9	Specificity_I_00032	370.5	0	Type I specificity subunit	RM
Pfam	UHGV-1390702_9	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-1390702_9	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-1390702_9	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-1390702_9	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_10	phrog_87	80.1	2.1e-23	metallo-protease	other
UniRef90	UHGV-1390702_10	UniRef90_UPI000930E984	139.0	1.82e-39	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1390702_10	1298920.KI911353_gene525	135.0	5.13e-39	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1390702_10	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1390702_10	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1390702_10	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1390702_11	K22299	53.4	0.0000000000000056	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1390702_11	phrog_8	48.3	0.00000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1390702_11	UniRef90_A0A3P1V799	92.4	4.77e-21	XRE family transcriptional regulator (Fragment)	N/A
eggNOG-mapper	UHGV-1390702_11	1214184.ALKY01000038_gene396	80.5	5.71e-16	Peptidase S24-like	N/A
Pfam	UHGV-1390702_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1390702_11	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-1390702_11	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1390702_12	K07729	47.5	0.00000000000036	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1390702_12	phrog_3	40.0	0.00000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-1390702_12	UniRef90_W0FH90	66.2	0.000000000000673	Transcriptional regulator, Cro/CI family	N/A
eggNOG-mapper	UHGV-1390702_12	756499.Desde_3819	48.5	0.00000258	sequence-specific DNA binding	N/A
Pfam	UHGV-1390702_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1390702_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1390702_12	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1390702_24	K08309	62.6	8e-18	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-1390702_24	phrog_32437	211.3	0	N/A	unknown function
UniRef90	UHGV-1390702_24	UniRef90_R6ETT3	214.0	0	Transglycosylase SLT domain protein	N/A
eggNOG-mapper	UHGV-1390702_24	742741.HMPREF9475_00405	91.3	5.92e-20	Transglycosylase SLT domain	N/A
Pfam	UHGV-1390702_24	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1390702_24	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1390702_24	PF01464,MF_01381,NF011856,COG0741	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390702_25	PF09889,MF_00649	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_26	phrog_757	46.6	0.00000000000021	DNA methyltransferase	other
eggNOG-mapper	UHGV-1390702_26	658655.HMPREF0988_00884	271.0	0	N/A	N/A
AcrCatalog	UHGV-1390702_26	cluster_47493	182.0	0	NA	N/A
structural_annotation	UHGV-1390702_26	PF00145,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_28	phrog_22292	109.0	3.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-1390702_28	1336234.JAGN01000004_gene538	55.1	0.000000155	N/A	N/A
PHROG	UHGV-1390702_29	phrog_599	42.4	0.000000000014	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1390702_29	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-1390702_32	phrog_3584	232.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1390702_32	936375.HMPREF1152_1066	204.0	0	N/A	N/A
structural_annotation	UHGV-1390702_32	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_33	phrog_119	62.9	5.2e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390702_33	UniRef90_R6ERW5	123.0	6.67e-35	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1390702_33	999413.HMPREF1094_02014	107.0	3.04e-29	HNH nucleases	N/A
COG	UHGV-1390702_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1390702_35	phrog_361	92.9	3e-27	terminase small subunit	head and packaging
UniRef90	UHGV-1390702_35	UniRef90_R6ETV2	171.0	0	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-1390702_35	596315.HMPREF0634_0388	92.0	2e-22	Phage terminase, small subunit	N/A
Pfam	UHGV-1390702_35	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1390702_35	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_36	phrog_9	295.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1390702_36	UniRef90_R6F310	1012.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1390702_36	1226322.HMPREF1545_00113	833.0	0	Phage Terminase	N/A
Pfam	UHGV-1390702_36	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1390702_36	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1390702_36	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1390702_36	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_37	phrog_12	165.5	0	portal protein	head and packaging
UniRef90	UHGV-1390702_37	UniRef90_R6FMT3	612.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-1390702_37	1226322.HMPREF1545_00114	473.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1390702_37	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1390702_37	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1390702_37	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1390702_37	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1390702_38	K06904	92.0	8.7e-27	N/A	N/A
PHROG	UHGV-1390702_38	phrog_80	114.9	1.1e-33	head maturation protease	head and packaging
UniRef90	UHGV-1390702_38	UniRef90_A0A3D1FL96	193.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1390702_38	33035.JPJF01000039_gene272	181.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1390702_38	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1390702_38	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1390702_38	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1390702_38	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390702_39	1235798.C817_04584	66.6	0.000000000000487	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1390702_39	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-1390702_39	COG3740	N/A	N/A	Phage head maturation protease	N/A
PHROG	UHGV-1390702_40	phrog_10	216.4	0	major head protein	head and packaging
UniRef90	UHGV-1390702_40	UniRef90_R6ERX1	652.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1390702_40	1226322.HMPREF1545_00116	622.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1390702_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1390702_40	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1390702_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1390702_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1390702_40	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_41	phrog_2550	92.8	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-1390702_41	1235798.C817_04586	110.0	2.56e-30	N/A	N/A
structural_annotation	UHGV-1390702_41	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_42	phrog_19734	135.0	3e-40	N/A	unknown function
UniRef90	UHGV-1390702_42	UniRef90_R6ETV7	139.0	1.51e-40	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-1390702_42	1232446.BAIE02000002_gene828	91.3	2.44e-22	N/A	N/A
structural_annotation	UHGV-1390702_42	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1390702_43	1235798.C817_04588	75.9	2.23e-16	N/A	N/A
structural_annotation	UHGV-1390702_43	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1390702_44	UniRef90_R6FMT8	226.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1390702_44	33035.JPJF01000039_gene277	160.0	0	N/A	N/A
structural_annotation	UHGV-1390702_44	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_45	phrog_88	91.1	1.1e-26	major tail protein	tail
UniRef90	UHGV-1390702_45	UniRef90_R6ERX7	303.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-1390702_45	33035.JPJF01000039_gene278	238.0	0	N/A	N/A
NCBIFam	UHGV-1390702_45	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1390702_45	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_46	phrog_2115	40.6	0.000000000052	tail protein	tail
eggNOG-mapper	UHGV-1390702_46	33035.JPJF01000039_gene279	55.1	0.0000000933	N/A	N/A
structural_annotation	UHGV-1390702_46	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1390702_47	K20282	52.9	0.0000000000000011	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1390702_47	phrog_23464	480.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1390702_47	665950.HMPREF1025_02660	186.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-1390702_47	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1390702_48	phrog_33	82.4	9e-24	distal tail protein Dit	tail
UniRef90	UHGV-1390702_48	UniRef90_A0A3R6C171	211.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1390702_48	1235798.C817_02569	206.0	0	tail component	N/A
NCBIFam	UHGV-1390702_48	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1390702_48	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1390702_48	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1390702_49	phrog_13289	442.9	0	tail protein	tail
UniRef90	UHGV-1390702_49	UniRef90_R6ERY2	721.0	0	Phage minor structural protein N-terminal region	N/A
eggNOG-mapper	UHGV-1390702_49	1235798.C817_02568	526.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1390702_49	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1390702_49	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1390702_49	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
PHROG	UHGV-1390702_50	phrog_19280	97.9	7.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-1390702_50	1235798.C817_04596	84.0	0.0000000000000162	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-1390702_50	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1390702_52	phrog_881	60.7	1.8e-17	holin	lysis
UniRef90	UHGV-1390702_52	UniRef90_UPI001D0692FC	86.3	4.35e-21	phage holin	N/A
eggNOG-mapper	UHGV-1390702_52	476272.RUMHYD_01966	87.0	3.81e-22	Putative phage holin Dp-1	N/A
Pfam	UHGV-1390702_52	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1390702_52	PF16938	N/A	N/A	N/A	N/A