UHGV-1390745 (vOTU-166291)

Viral Genome: UHGV-1390745

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1390745
vOTU ID	vOTU-166291
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0213654
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.51 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.59
Jumbo phage	No

Genome content
Genome length (bp)	30,412
GC content	50.39%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	92%
Average CDS length (bps)	637.91
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.51)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1390745_1	K06400	349.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1390745_1	phrog_95	337.4	0	integrase	integration and excision
UniRef90	UHGV-1390745_1	UniRef90_A0A355JGU5	481.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1390745_1	1235835.C814_00825	411.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1390745_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1390745_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1390745_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1390745_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1390745_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_3	phrog_87	84.8	7.3e-25	metallo-protease	other
UniRef90	UHGV-1390745_3	UniRef90_R6EG79	154.0	1.4013e-45	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1390745_3	1507.HMPREF0262_00423	142.0	7.83046e-42	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1390745_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1390745_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1390745_3	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1390745_4	UniRef90_A0A316RBI4	99.0	2.21e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1390745_4	1297617.JPJD01000059_gene2644	55.5	0.0000000634	addiction module antidote protein HigA	N/A
COG	UHGV-1390745_4	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1390745_4	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1390745_5	UniRef90_A0A316R8G0	52.0	0.000000221	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1390745_5	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1390745_8	K01449	58.9	5e-17	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1390745_8	phrog_18750	150.3	1.26117e-44	N/A	unknown function
UniRef90	UHGV-1390745_8	UniRef90_A0A3D5TM41	250.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1390745_8	1203606.HMPREF1526_01876	141.0	1.38e-39	Cell wall hydrolase	N/A
Pfam	UHGV-1390745_8	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-1390745_8	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-1390745_8	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390745_10	PF07073,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_14	phrog_824	134.0	4.2e-40	N/A	unknown function
UniRef90	UHGV-1390745_14	UniRef90_A0A3D5TLJ2	350.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1390745_14	1235792.C808_00075	134.0	2.96e-36	VRR_NUC	N/A
Pfam	UHGV-1390745_14	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1390745_14	PF08774,COG1996	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_16	phrog_7445	61.8	1.1e-17	N/A	unknown function
UniRef90	UHGV-1390745_16	UniRef90_UPI001B3C69A2	70.9	0.000000000000143	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-1390745_16	1232449.BAHV02000018_gene1541	52.4	0.000000561	PcfK-like protein	N/A
Pfam	UHGV-1390745_16	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-1390745_16	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_17	phrog_8470	319.6	0	N/A	unknown function
UniRef90	UHGV-1390745_17	UniRef90_A0A238ZSA1	193.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1390745_17	1117108.PAALTS15_13637	176.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1390745_17	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1390745_17	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_18	phrog_15609	141.3	6.30024e-42	N/A	unknown function
eggNOG-mapper	UHGV-1390745_18	1514668.JOOA01000001_gene225	68.6	0.000000000386	N/A	N/A
Pfam	UHGV-1390745_18	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-1390745_18	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_22	phrog_3136	133.2	8.4e-40	N/A	unknown function
UniRef90	UHGV-1390745_22	UniRef90_UPI001C26B029	115.0	1.23e-28	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1390745_22	394503.Ccel_3165	58.5	0.0000000168	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1390745_22	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1390745_22	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1390745_22	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_23	phrog_24518	46.4	0.00000000000051	N/A	unknown function
eggNOG-mapper	UHGV-1390745_23	693746.OBV_25370	81.6	9.71e-17	N/A	N/A
PHROG	UHGV-1390745_24	phrog_3584	130.1	1.4e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1390745_24	537013.CLOSTMETH_02141	80.1	0.00000000000000116	N/A	N/A
structural_annotation	UHGV-1390745_24	PF21578,MF_00360	N/A	N/A	N/A	N/A
UniRef90	UHGV-1390745_26	UniRef90_A0A8D9PDT5	53.1	0.000000806	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1390745_27	phrog_36	74.2	2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1390745_27	UniRef90_UPI001D05F87A	94.0	3.94e-22	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1390745_27	1235835.C814_01174	99.8	3.39e-25	N/A	N/A
structural_annotation	UHGV-1390745_27	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-1390745_28	K07451	49.1	0.000000000000099	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1390745_28	phrog_144	104.0	1.1e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1390745_28	UniRef90_U5CG67	91.3	5.8e-21	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1390745_28	1508644.SFBmNL_01550	87.0	2.47e-20	HNH endonuclease	N/A
Pfam	UHGV-1390745_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1390745_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1390745_28	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_29	phrog_83	90.4	2.1e-26	terminase small subunit	head and packaging
UniRef90	UHGV-1390745_29	UniRef90_A0A0A7S0C4	135.0	6.04e-38	p27 family terminase small subunit	N/A
eggNOG-mapper	UHGV-1390745_29	1567013.A0A0A7S0C4_9CAUD	135.0	1.01e-38	Phage terminase, small subunit	N/A
Pfam	UHGV-1390745_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-1390745_29	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
structural_annotation	UHGV-1390745_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_30	phrog_9	318.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1390745_30	UniRef90_UPI000C7CE66A	718.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1390745_30	742738.HMPREF9460_04067	651.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1390745_30	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1390745_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1390745_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1390745_30	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_31	phrog_12	270.5	0	portal protein	head and packaging
UniRef90	UHGV-1390745_31	UniRef90_UPI001C11FE4E	493.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1390745_31	634956.Geoth_0787	433.0	0	Phage portal protein	N/A
Pfam	UHGV-1390745_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1390745_31	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1390745_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1390745_31	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_32	phrog_16951	255.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1390745_32	246199.CUS_7602	191.0	0	N/A	N/A
structural_annotation	UHGV-1390745_32	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_33	phrog_10	159.5	0	major head protein	head and packaging
UniRef90	UHGV-1390745_33	UniRef90_UPI000C7BECD8	318.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1390745_33	1414720.CBYM010000002_gene572	235.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1390745_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1390745_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1390745_33	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1390745_33	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_34	phrog_40	40.5	0.000000000035	head-tail adaptor Ad1	connector
UniRef90	UHGV-1390745_34	UniRef90_UPI0006544DF9	53.1	0.000000336	head-tail connector protein	N/A
Pfam	UHGV-1390745_34	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-1390745_34	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1390745_34	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_35	phrog_1951	46.9	0.00000000000046	head-tail adaptor	connector
eggNOG-mapper	UHGV-1390745_35	457396.CSBG_01051	52.0	0.000000317	head-tail adaptor	N/A
Pfam	UHGV-1390745_35	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-1390745_35	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
PHROG	UHGV-1390745_36	phrog_5	41.3	0.00000000003	tail completion or Neck1 protein	connector
UniRef90	UHGV-1390745_36	UniRef90_A0A174CK72	97.1	5.58e-23	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1390745_36	1195236.CTER_5108	84.3	7.46e-19	Phage protein, HK97 gp10 family	N/A
Pfam	UHGV-1390745_36	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1390745_36	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_37	phrog_78	52.2	0.000000000000012	tail terminator	connector
eggNOG-mapper	UHGV-1390745_37	1238184.CM001792_gene2512	65.1	0.00000000000401	N/A	N/A
structural_annotation	UHGV-1390745_37	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_38	phrog_88	81.7	9.4e-24	major tail protein	tail
UniRef90	UHGV-1390745_38	UniRef90_UPI001D07B441	127.0	8.52e-34	major tail protein	N/A
eggNOG-mapper	UHGV-1390745_38	1235792.C808_03059	105.0	2.27e-24	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1390745_38	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1390745_38	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390745_38	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_39	phrog_2115	43.9	0.0000000000041	tail protein	tail
structural_annotation	UHGV-1390745_39	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_40	phrog_58	97.4	1.8e-34	tail length tape measure protein	tail
UniRef90	UHGV-1390745_40	UniRef90_A0A316QKN8	285.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-1390745_40	1216932.CM240_1382	265.0	0	tape measure	N/A
COG	UHGV-1390745_40	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-1390745_40	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_41	phrog_33	74.4	2.6e-21	distal tail protein Dit	tail
UniRef90	UHGV-1390745_41	UniRef90_D6XZX5	113.0	3.42e-27	Phage tail component	N/A
eggNOG-mapper	UHGV-1390745_41	1444306.JFZC01000034_gene2623	140.0	2.4e-38	tail component	N/A
COG	UHGV-1390745_41	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1390745_41	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1390745_42	phrog_1067	368.1	0	minor head protein	head and packaging
UniRef90	UHGV-1390745_42	UniRef90_A0A1C6H6B4	345.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1390745_42	1160721.RBI_I01574	329.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1390745_42	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1390745_42	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1390745_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1390745_42	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1390745_44	PF10651,NF009453	N/A	N/A	N/A	N/A