UHGV-1394381 (vOTU-022775)

Viral Genome: UHGV-1394381

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1394381
vOTU ID	vOTU-022775
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0226599
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.03 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9663
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.14
Jumbo phage	No

Genome content
Genome length (bp)	32,673
GC content	44.58%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	95%
Average CDS length (bps)	675.91
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1394381_1	phrog_1281	147.4	4.06377e-44	N/A	unknown function
UniRef90	UHGV-1394381_1	UniRef90_A0A316QHN5	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-1394381_1	428127.EUBDOL_01537	160.0	0	N/A	N/A
Pfam	UHGV-1394381_1	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-1394381_1	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394381_1	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-1394381_2	phrog_1936	50.3	0.000000000000042	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1394381_2	UniRef90_A0A843DAJ2	92.4	4.71e-22	Type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-1394381_2	428127.EUBDOL_01536	115.0	8.03e-32	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-1394381_2	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
structural_annotation	UHGV-1394381_2	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
UniRef90	UHGV-1394381_7	UniRef90_A0A3E2B3T2	82.4	4.23e-18	N/A	N/A
PHROG	UHGV-1394381_8	phrog_11393	65.0	7.6e-19	tail fiber protein	tail
eggNOG-mapper	UHGV-1394381_8	1064535.MELS_1932	67.4	0.0000000012	Membrane	N/A
COG	UHGV-1394381_8	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1394381_9	phrog_33513	43.0	0.000000000000018	N/A	unknown function
eggNOG-mapper	UHGV-1394381_9	686439.D0U203_9CAUD	61.2	0.00000289	N/A	N/A
structural_annotation	UHGV-1394381_10	PF06013,MF_00683,NF003844,COG4842	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394381_11	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394381_14	PF09393,PF05561,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394381_16	PF07405,TIGR01563	N/A	N/A	N/A	N/A
UniRef90	UHGV-1394381_18	UniRef90_A0A2Z4GUC0	668.0	0	Chitobiase/beta-hexosaminidase	N/A
eggNOG-mapper	UHGV-1394381_18	335541.Swol_0141	72.0	0.000000000241	nucleotide catabolic process	N/A
Pfam	UHGV-1394381_18	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
COG	UHGV-1394381_18	COG0737	N/A	N/A	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	N/A
structural_annotation	UHGV-1394381_18	PF05065,PF13620,MF_04119,TIGR04387,TIGR04134,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1394381_20	UniRef90_UPI001922BDE8	125.0	3.23e-36	N/A	N/A
eggNOG-mapper	UHGV-1394381_20	588581.Cpap_1521	62.4	0.0000000000253	N/A	N/A
structural_annotation	UHGV-1394381_20	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1394381_21	phrog_581	102.0	5.6e-30	minor head protein	head and packaging
UniRef90	UHGV-1394381_21	UniRef90_A0A2Z4GUI4	239.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1394381_21	997296.PB1_16234	72.0	0.0000000000368	Phage minor capsid protein 2	N/A
Pfam	UHGV-1394381_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1394381_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1394381_21	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1394381_22	phrog_533	55.3	1.1e-23	portal protein	head and packaging
UniRef90	UHGV-1394381_22	UniRef90_A0A2Z4GUT7	691.0	0	Portal protein	N/A
structural_annotation	UHGV-1394381_22	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1394381_23	K06909	145.9	3.40516e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1394381_23	phrog_3717	84.8	8.1e-25	terminase large subunit	head and packaging
UniRef90	UHGV-1394381_23	UniRef90_A0A2Z4GUK2	696.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1394381_23	762051.LKI_09665	124.0	2.15e-28	Terminase RNAseH like domain	N/A
Pfam	UHGV-1394381_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1394381_23	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-1394381_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1394381_23	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1394381_24	UniRef90_UPI00067F0D6E	57.8	0.0000000582	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-1394381_24	1235790.C805_00037	60.1	0.00000000166	N/A	N/A
Pfam	UHGV-1394381_24	PF08279	N/A	N/A	HTH domain	HTH_11
structural_annotation	UHGV-1394381_24	PF02796,NF040785	N/A	N/A	N/A	N/A
PHROG	UHGV-1394381_25	phrog_34144	69.8	2.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-1394381_25	908338.HMPREF9286_0178	75.9	6.69e-18	N/A	N/A
structural_annotation	UHGV-1394381_25	PF20111	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1394381_26	1118057.CAGX01000020_gene1618	67.4	0.0000000000571	Phage Mu protein F like protein	N/A
COG	UHGV-1394381_26	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1394381_27	phrog_36	56.4	6.5e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1394381_27	PF07374,MF_00674,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1394381_31	phrog_3136	102.8	1.8e-30	N/A	unknown function
UniRef90	UHGV-1394381_31	UniRef90_A0A3D0HBD2	101.0	1.18e-24	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1394381_31	1235792.C808_00630	56.2	0.000000108	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1394381_31	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
KOfam	UHGV-1394381_34	K00571	100.4	2.4e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1394381_34	phrog_67	89.2	8.1e-28	DNA methyltransferase	other
UniRef90	UHGV-1394381_34	UniRef90_A0A1K1KNX8	397.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1394381_34	35241.Q9XJE8_BPTU2	387.0	0	helicase activity	N/A
PADLOC	UHGV-1394381_34	MTase_II_00157	90.2	1.4e-27	Type II methyltransferase	RM
Pfam	UHGV-1394381_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-1394381_34	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1394381_35	K03111	143.1	2.79979e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1394381_35	phrog_44	141.1	6.00036e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394381_35	UniRef90_A0A355V3M4	158.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1394381_35	768710.DesyoDRAFT_5235	114.0	4.34e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1394381_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1394381_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1394381_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1394381_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1394381_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1394381_36	K02315	126.4	2.7e-37	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1394381_36	phrog_50	116.4	2.7e-34	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394381_36	UniRef90_F7V9D6	137.0	3.33e-35	Putative DnaC	N/A
eggNOG-mapper	UHGV-1394381_36	508419.F8J195_9CAUD	135.0	1.55e-35	IstB-like ATP binding protein	N/A
Pfam	UHGV-1394381_36	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
structural_annotation	UHGV-1394381_36	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1394381_38	phrog_16304	94.2	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-1394381_38	1227266.HMPREF1551_00549	93.6	5.99e-20	N/A	N/A
Pfam	UHGV-1394381_38	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1394381_38	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1394381_39	K01160	40.3	0.000000000074	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1394381_39	phrog_1682	69.0	7.8e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394381_39	UniRef90_R7FGZ0	111.0	4.28e-29	Gp63	N/A
eggNOG-mapper	UHGV-1394381_39	997350.HMPREF9129_1668	89.0	4.53e-21	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1394381_39	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1394381_39	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1394381_40	phrog_659	210.2	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394381_40	UniRef90_UPI001C7D2471	175.0	0	N/A	N/A
eggNOG-mapper	UHGV-1394381_40	411490.ANACAC_00805	164.0	0	N/A	N/A
Pfam	UHGV-1394381_40	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1394381_43	PF06531	N/A	N/A	N/A	N/A
KOfam	UHGV-1394381_44	K07729	52.5	0.000000000000011	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1394381_44	UniRef90_A0A2A4DTX0	51.2	0.000000429	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1394381_44	768486.EHR_02755	51.2	0.0000000719	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1394381_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1394381_44	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1394381_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1394381_45	K07729	53.4	0.0000000000000054	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1394381_45	UniRef90_A0A3C2DVT6	61.6	0.000000000039	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1394381_45	1151061.CAJY01000016_gene500	53.9	0.00000000892	sequence-specific DNA binding	N/A
Pfam	UHGV-1394381_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1394381_45	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1394381_45	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1394381_46	phrog_1305	87.2	1.7e-25	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394381_46	UniRef90_UPI000C24C531	88.2	5.75e-18	N/A	N/A
eggNOG-mapper	UHGV-1394381_46	1238184.CM001792_gene2528	72.4	0.00000000000102	N/A	N/A
structural_annotation	UHGV-1394381_46	COG2250	N/A	N/A	N/A	N/A