UHGV-1394798 (vOTU-085534)

Viral Genome: UHGV-1394798

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1394798
vOTU ID	vOTU-085534
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0262368
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9761
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.7
Jumbo phage	No

Genome content
Genome length (bp)	38,872
GC content	43.27%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	95%
Average CDS length (bps)	669.22
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1394798_1	K00986	68.2	1.2e-19	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1394798_1	phrog_1423	174.8	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394798_1	UniRef90_A0A417ANK1	724.0	0	Reverse transcriptase	N/A
eggNOG-mapper	UHGV-1394798_1	33035.JPJF01000043_gene1000	458.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1394798_1	icity0040	42.4	0.0000000000013	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1394798_1	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1394798_1	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1394798_1	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1394798_2	457412.RSAG_04672	104.0	1.45e-27	N/A	N/A
PHROG	UHGV-1394798_3	phrog_1382	50.5	0.000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1394798_3	33035.JPJF01000043_gene998	45.8	0.00000405	N/A	N/A
PHROG	UHGV-1394798_4	phrog_937	65.4	1.1e-18	hemolysin	other
eggNOG-mapper	UHGV-1394798_4	411459.RUMOBE_01081	124.0	1.28e-34	N/A	N/A
PHROG	UHGV-1394798_5	phrog_443	72.2	1.1e-20	holin	lysis
UniRef90	UHGV-1394798_5	UniRef90_UPI000E5CA950	114.0	1.31e-31	holin	N/A
eggNOG-mapper	UHGV-1394798_5	626523.GCWU000342_01012	86.3	4.26e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1394798_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1394798_5	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1394798_6	K07273	192.1	0	acm; lysozyme	N/A
PHROG	UHGV-1394798_6	phrog_6745	162.1	0	endolysin	lysis
UniRef90	UHGV-1394798_6	UniRef90_A0A417AND4	968.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1394798_6	1121115.AXVN01000006_gene2170	721.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-1394798_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1394798_6	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1394798_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1394798_6	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1394798_6	PF01183,TIGR02594,TIGR04303,COG3757,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-1394798_7	K06400	285.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1394798_7	phrog_95	311.2	0	integrase	integration and excision
UniRef90	UHGV-1394798_7	UniRef90_A0A417ANQ9	877.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1394798_7	1123075.AUDP01000026_gene425	386.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1394798_7	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1394798_7	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1394798_7	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1394798_7	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1394798_7	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1394798_8	UniRef90_A0A417PG51	284.0	0	BIG2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1394798_8	445971.ANASTE_01864	63.5	0.00000000118	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1394798_8	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1394798_8	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
PHROG	UHGV-1394798_9	phrog_16443	49.1	0.00000000000007	N/A	unknown function
eggNOG-mapper	UHGV-1394798_9	334390.LAF_0659	50.8	0.00000117	N/A	N/A
AcrCatalog	UHGV-1394798_9	cluster_1135	45.1	0.00000000514	NA	N/A
KOfam	UHGV-1394798_10	K18830	50.2	0.000000000000056	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1394798_10	phrog_8	41.2	0.000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-1394798_10	UniRef90_A0A417PG37	285.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1394798_10	742740.HMPREF9474_04328	111.0	2.14e-29	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1394798_10	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1394798_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1394798_10	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_15	phrog_59	67.4	1.8e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394798_15	UniRef90_A0A417ANM8	409.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1394798_15	1410650.JHWL01000037_gene604	154.0	8.40779e-45	N/A	N/A
PADLOC	UHGV-1394798_15	HEase_00016	54.4	4.4e-17	homing endonuclease	RM
Pfam	UHGV-1394798_15	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1394798_15	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1394798_15	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1394798_16	1235792.C808_00637	45.1	0.00000609	N/A	N/A
PHROG	UHGV-1394798_19	phrog_3584	137.6	8.69996e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1394798_19	1235792.C808_03084	249.0	0	N/A	N/A
structural_annotation	UHGV-1394798_19	PF01446	N/A	N/A	N/A	N/A
UniRef90	UHGV-1394798_20	UniRef90_A0A1C6IUE3	175.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1394798_20	1280698.AUJS01000007_gene1015	70.5	0.000000000000258	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-1394798_20	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1394798_20	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-1394798_22	K03496	188.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1394798_22	phrog_164	143.8	1.19951e-42	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394798_22	UniRef90_A0A417PG63	496.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1394798_22	97139.C824_00725	236.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1394798_22	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1394798_22	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1394798_22	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1394798_23	K03497	50.6	0.000000000000036	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1394798_23	phrog_15077	148.0	1.20512e-43	N/A	unknown function
UniRef90	UHGV-1394798_23	UniRef90_A0A417PG73	896.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1394798_23	1235792.C808_00610	140.0	3.25e-33	ParB-like nuclease domain	N/A
Pfam	UHGV-1394798_23	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1394798_23	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1394798_23	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_28	phrog_3502	41.5	0.000000000026	N/A	unknown function
UniRef90	UHGV-1394798_28	UniRef90_A0A417ANR7	174.0	0	LexA_DNA_bind domain-containing protein	N/A
Pfam	UHGV-1394798_28	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-1394798_28	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1394798_28	PF01726,MF_00732,TIGR00738,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-1394798_30	K03111	135.8	5.1e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1394798_30	phrog_44	135.3	4.39999e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394798_30	UniRef90_A0A417PG59	275.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1394798_30	457412.RSAG_03244	210.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1394798_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1394798_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1394798_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1394798_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1394798_30	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_33	phrog_7566	95.1	3.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-1394798_33	411459.RUMOBE_00948	104.0	2.97e-27	N/A	N/A
PHROG	UHGV-1394798_34	phrog_6072	45.1	0.0000000000012	N/A	unknown function
PHROG	UHGV-1394798_35	phrog_11237	64.9	1.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-1394798_35	1235798.C817_02584	102.0	4.65e-26	N/A	N/A
PHROG	UHGV-1394798_36	phrog_1315	40.2	0.000000000016	N/A	unknown function
PHROG	UHGV-1394798_37	phrog_119	47.8	0.00000000000021	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1394798_37	UniRef90_A0A417PG49	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-1394798_37	1235792.C808_00081	141.0	7.42688e-43	HNH nucleases	N/A
Pfam	UHGV-1394798_37	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1394798_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1394798_38	phrog_5110	98.2	5e-29	terminase small subunit	head and packaging
UniRef90	UHGV-1394798_38	UniRef90_A0A1M6MVK9	154.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1394798_38	1235792.C808_00082	162.0	0	N/A	N/A
Pfam	UHGV-1394798_38	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1394798_38	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_39	phrog_9	250.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1394798_39	UniRef90_A0A417PG72	1157.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1394798_39	1235792.C808_00083	931.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1394798_39	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1394798_39	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1394798_39	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1394798_39	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_40	phrog_12	97.9	8.5e-29	portal protein	head and packaging
UniRef90	UHGV-1394798_40	UniRef90_A0A417PG64	733.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1394798_40	1235792.C808_00084	424.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1394798_40	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1394798_40	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1394798_40	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1394798_40	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1394798_41	K01358	118.4	9e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1394798_41	phrog_94	208.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1394798_41	UniRef90_A0A417PG92	517.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1394798_41	1235792.C808_00085	286.0	0	Clp protease	N/A
Pfam	UHGV-1394798_41	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1394798_41	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1394798_41	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_42	phrog_10	134.2	1.4e-39	major head protein	head and packaging
UniRef90	UHGV-1394798_42	UniRef90_A0A417PG62	908.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1394798_42	1235792.C808_00086	681.0	0	Phage capsid family	N/A
Pfam	UHGV-1394798_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1394798_42	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1394798_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1394798_42	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1394798_42	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_43	phrog_749	71.9	7.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1394798_43	1235792.C808_00087	135.0	3.81e-40	N/A	N/A
eggNOG-mapper	UHGV-1394798_44	1235792.C808_00088	139.0	1.96e-40	N/A	N/A
structural_annotation	UHGV-1394798_44	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_45	phrog_5	49.5	0.00000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-1394798_45	UniRef90_A0A417PG70	225.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1394798_45	397287.C807_04036	98.6	6.92e-25	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1394798_45	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1394798_45	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_46	phrog_78	41.4	0.000000000022	tail terminator	connector
eggNOG-mapper	UHGV-1394798_46	610130.Closa_0748	130.0	7.85e-38	N/A	N/A
structural_annotation	UHGV-1394798_46	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_47	phrog_88	150.8	5.60519e-45	major tail protein	tail
UniRef90	UHGV-1394798_47	UniRef90_A0A417ANR0	399.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1394798_47	411490.ANACAC_00732	236.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1394798_47	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1394798_47	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_48	phrog_709	118.1	4.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-1394798_48	610130.Closa_0750	143.0	2.4803e-42	N/A	N/A
structural_annotation	UHGV-1394798_48	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_49	phrog_3033	68.2	9.5e-20	N/A	unknown function
UniRef90	UHGV-1394798_49	UniRef90_A0A2X2UJ60	80.9	3.89e-19	Phage-like protein	N/A
eggNOG-mapper	UHGV-1394798_49	1235799.C818_01010	86.7	3.35e-22	N/A	N/A
KOfam	UHGV-1394798_50	K10421	52.0	0.000000000000004	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1394798_50	phrog_1272	584.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1394798_50	UniRef90_A0A417PG60	1672.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1394798_50	1235799.C818_00430	519.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1394798_50	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1394798_50	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1394798_50	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1394798_50	PF10145,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_51	phrog_33	51.6	0.000000000000022	distal tail protein Dit	tail
UniRef90	UHGV-1394798_51	UniRef90_UPI00148B3121	313.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1394798_51	1235792.C808_00094	292.0	0	phage tail	N/A
COG	UHGV-1394798_51	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1394798_51	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_52	phrog_9886	793.8	0	N/A	unknown function
UniRef90	UHGV-1394798_52	UniRef90_A0A417PG56	1883.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1394798_52	1123075.AUDP01000020_gene1524	699.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1394798_52	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1394798_52	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1394798_52	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1394798_53	phrog_18444	73.0	3e-21	N/A	unknown function
UniRef90	UHGV-1394798_53	UniRef90_UPI00156E9A45	71.2	0.00000000000000558	peptide chain release factor 2	N/A
PHROG	UHGV-1394798_55	phrog_17147	426.7	0	N/A	unknown function
UniRef90	UHGV-1394798_55	UniRef90_A0A1M6MWL0	625.0	0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	N/A
eggNOG-mapper	UHGV-1394798_55	33035.JPJF01000043_gene1001	639.0	0	N/A	N/A