UHGV-1395948 (vOTU-145920)

Viral Genome: UHGV-1395948

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1395948
vOTU ID	vOTU-145920
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0208755
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.19 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.77
Jumbo phage	No

Genome content
Genome length (bp)	29,528
GC content	39.92%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	94%
Average CDS length (bps)	526.13
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1395948_1	K14059	111.5	1.2e-32	int; integrase	N/A
PHROG	UHGV-1395948_1	phrog_1	114.5	1.2e-33	integrase	integration and excision
UniRef90	UHGV-1395948_1	UniRef90_A0A173REA3	788.0	0	Site-specific tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-1395948_1	97139.C824_00125	324.0	0	Phage integrase family	N/A
Pfam	UHGV-1395948_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1395948_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1395948_1	PF00589,PF02920,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1395948_2	UniRef90_A0A173RE24	151.0	0	Bacterial regulatory proteins, luxR family	N/A
Pfam	UHGV-1395948_2	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-1395948_2	PF00196,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1395948_3	K00571	112.9	3.8e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1395948_3	phrog_67	99.1	2.3e-29	DNA methyltransferase	other
UniRef90	UHGV-1395948_3	UniRef90_UPI001C399578	504.0	0	Site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1395948_3	658655.HMPREF0988_00878	496.0	0	DNA methylase	N/A
PADLOC	UHGV-1395948_3	MTase_II_00157	96.4	3.4e-28	Type II methyltransferase	RM
Pfam	UHGV-1395948_3	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1395948_3	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1395948_3	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_5	phrog_6724	79.2	3.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-1395948_5	1463936.JOJI01000043_gene7935	62.8	0.000000000118	N/A	N/A
PHROG	UHGV-1395948_7	phrog_18361	95.6	2.3e-29	N/A	unknown function
UniRef90	UHGV-1395948_7	UniRef90_UPI0018F57B3A	146.0	2.40995e-41	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1395948_7	411468.CLOSCI_00298	135.0	1.59e-37	N/A	N/A
structural_annotation	UHGV-1395948_7	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_11	phrog_20593	62.2	8.2e-18	N/A	unknown function
UniRef90	UHGV-1395948_12	UniRef90_UPI001C02F342	55.5	0.000000341	N/A	N/A
eggNOG-mapper	UHGV-1395948_12	397290.C810_01514	62.4	0.0000000000423	N/A	N/A
PHROG	UHGV-1395948_13	phrog_8684	78.2	4.1e-23	N/A	unknown function
UniRef90	UHGV-1395948_13	UniRef90_A0A1Q6ETU5	159.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1395948_13	411470.RUMGNA_02199	76.3	0.00000000000000104	N/A	N/A
Pfam	UHGV-1395948_13	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1395948_13	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1395948_18	K02314	298.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1395948_18	phrog_19	282.5	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1395948_18	UniRef90_A0A173RD23	791.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1395948_18	1298920.KI911353_gene2061	344.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1395948_18	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1395948_18	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1395948_18	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1395948_18	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_19	phrog_11769	193.6	0	N/A	unknown function
UniRef90	UHGV-1395948_19	UniRef90_A0A173RDT0	489.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-1395948_19	536232.CLM_1634	188.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1395948_19	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1395948_19	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1395948_19	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_20	phrog_19106	322.4	0	N/A	unknown function
UniRef90	UHGV-1395948_20	UniRef90_A0A173RDE6	324.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-1395948_20	658655.HMPREF0988_00875	280.0	0	N/A	N/A
structural_annotation	UHGV-1395948_20	TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-1395948_22	K06167	71.5	1.2e-20	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1395948_22	phrog_392	195.7	0	metal-dependent hydrolase	other
UniRef90	UHGV-1395948_22	UniRef90_A0A173REW9	444.0	0	Beta-lactamase superfamily domain	N/A
eggNOG-mapper	UHGV-1395948_22	1144313.PMI10_00501	175.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1395948_22	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1395948_22	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1395948_22	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
UniRef90	UHGV-1395948_23	UniRef90_R7JZ94	415.0	0	Excinuclease ABC C subunit domain protein	N/A
eggNOG-mapper	UHGV-1395948_23	573061.Clocel_3554	228.0	0	GIY-YIG catalytic domain	N/A
Pfam	UHGV-1395948_23	PF06467	N/A	N/A	MYM-type Zinc finger with FCS sequence motif	zf-FCS
structural_annotation	UHGV-1395948_23	PF19835,PF06467,MF_00773,TIGR01453,COG2075	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_26	phrog_561	180.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1395948_26	UniRef90_UPI001904C527	186.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1395948_26	537013.CLOSTMETH_01715	196.0	0	N/A	N/A
structural_annotation	UHGV-1395948_26	NF007351,COG3723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1395948_29	1232453.BAIF02000057_gene1135	61.2	0.000000000374	N/A	N/A
KOfam	UHGV-1395948_31	K19171	103.6	1.8e-30	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1395948_31	phrog_77	233.7	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1395948_31	UniRef90_UPI001D02FD96	870.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1395948_31	1294142.CINTURNW_1008	313.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1395948_31	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1395948_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1395948_31	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_32	phrog_26861	89.9	1e-26	N/A	unknown function
UniRef90	UHGV-1395948_32	UniRef90_A0A173RCS5	347.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1395948_32	1120998.AUFC01000016_gene32	110.0	1.16e-27	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-1395948_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1395948_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1395948_32	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1395948_35	K07741	116.7	4.2e-34	antB; anti-repressor protein	N/A
PHROG	UHGV-1395948_35	phrog_130	236.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1395948_35	UniRef90_A0A1T5K3B0	310.0	0	Phage antirepressor protein YoqD, KilAC domain	N/A
eggNOG-mapper	UHGV-1395948_35	1123263.AUKY01000072_gene2107	246.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1395948_35	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1395948_35	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1395948_35	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1395948_35	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_40	phrog_4608	155.6	0	anti-repressor	transcription regulation
UniRef90	UHGV-1395948_40	UniRef90_UPI001D00AF42	488.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-1395948_40	926561.KB900622_gene670	174.0	0	ORF6N domain	N/A
Pfam	UHGV-1395948_40	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-1395948_40	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1395948_40	PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-1395948_43	K18830	63.1	6.3e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1395948_43	phrog_8	53.6	0.0000000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-1395948_43	UniRef90_A0A1Q6LL24	141.0	8.72995e-41	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1395948_43	642492.Clole_0718	112.0	2.77e-30	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1395948_43	retron_type_VI_hth_cluster2_1	43.2	0.000000000007	N/A	Retron
Pfam	UHGV-1395948_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1395948_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1395948_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1395948_44	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1395948_44	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1395948_45	1232452.BAIB02000007_gene1607	85.1	2.02e-19	N/A	N/A
PHROG	UHGV-1395948_48	phrog_17196	149.2	1.54143e-44	kinase	other
eggNOG-mapper	UHGV-1395948_48	483218.BACPEC_01141	186.0	0	N/A	N/A
structural_annotation	UHGV-1395948_48	PF19537,PF13619,COG3536	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_49	phrog_18190	474.6	0	N/A	unknown function
UniRef90	UHGV-1395948_49	UniRef90_A0A173UFM3	899.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1395948_49	397290.C810_05239	291.0	0	N/A	N/A
Pfam	UHGV-1395948_49	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1395948_49	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_50	phrog_1194	41.8	0.000000000014	N/A	unknown function
Pfam	UHGV-1395948_50	PF20458	N/A	N/A	N/A	DUF6711
KOfam	UHGV-1395948_51	K07741	49.0	0.00000000000021	antB; anti-repressor protein	N/A
PHROG	UHGV-1395948_51	phrog_130	195.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1395948_51	UniRef90_F7JKG1	273.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1395948_51	658655.HMPREF0988_00912	273.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-1395948_51	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1395948_51	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1395948_51	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1395948_51	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-1395948_52	UniRef90_A0A173UG14	574.0	0	BIG2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1395948_52	1410624.JNKK01000088_gene2110	69.3	0.0000000000827	Bacterial Ig-like domain (group 2)	N/A
structural_annotation	UHGV-1395948_52	PF02368,PF07233,NF038353,NF005261	N/A	N/A	N/A	N/A
PHROG	UHGV-1395948_53	phrog_11489	94.2	7.9e-33	N/A	unknown function
UniRef90	UHGV-1395948_53	UniRef90_A0A173UHS1	598.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1395948_53	1232443.BAIA02000078_gene18	79.7	0.00000000000123	phage tail tape measure protein	N/A
COG	UHGV-1395948_53	COG1511	N/A	N/A	N/A	N/A