UHGV-1397753 (vOTU-114417)

Viral Genome: UHGV-1397753

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1397753
vOTU ID	vOTU-114417
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0208857
Associated BioSample	SAMN02334150
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.34 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.25
Jumbo phage	No

Genome content
Genome length (bp)	29,545
GC content	56.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	94%
Average CDS length (bps)	558.30
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1397753_1	phrog_3136	62.6	3.6e-18	N/A	unknown function
UniRef90	UHGV-1397753_1	UniRef90_A0A6N7TMC2	85.5	1.73e-17	ASCH domain-containing protein	N/A
PHROG	UHGV-1397753_4	phrog_31107	68.9	5.8e-20	N/A	unknown function
PHROG	UHGV-1397753_5	phrog_37083	233.2	0	N/A	unknown function
UniRef90	UHGV-1397753_6	UniRef90_E2ZNT7	94.4	7.89e-24	HTH_17 domain-containing protein	N/A
Pfam	UHGV-1397753_6	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1397753_6	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_8	phrog_38771	47.3	0.00000000000024	N/A	unknown function
PHROG	UHGV-1397753_9	phrog_674	150.7	9.80909e-45	N/A	unknown function
UniRef90	UHGV-1397753_9	UniRef90_A0A3E2UDL3	376.0	0	N/A	N/A
eggNOG-mapper	UHGV-1397753_9	742722.HMPREF9463_00201	84.7	7.17e-16	N/A	N/A
Pfam	UHGV-1397753_9	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1397753_9	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_10	phrog_2760	184.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397753_10	UniRef90_A0A3E2UDI4	409.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1397753_10	1235794.C811_01355	152.0	6.50062e-42	RecT family	N/A
Pfam	UHGV-1397753_10	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1397753_10	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1397753_10	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1397753_10	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397753_11	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1397753_12	K02086	59.6	3.1e-17	dnaD; DNA replication protein	N/A
PHROG	UHGV-1397753_12	phrog_6251	192.4	0	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397753_12	UniRef90_UPI001CBE9731	184.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1397753_12	634956.Geoth_0760	147.0	1.14e-39	dnaD_dom DnaD domain protein	N/A
Pfam	UHGV-1397753_12	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1397753_12	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1397753_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1397753_12	PF09681,PF07261,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397753_13	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397753_16	MF_00273,COG2157	N/A	N/A	N/A	N/A
UniRef90	UHGV-1397753_19	UniRef90_A0A845R8R0	110.0	5.57e-28	N/A	N/A
KOfam	UHGV-1397753_21	K00571	82.9	3.6e-24	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1397753_21	phrog_16	213.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397753_21	UniRef90_A0A3E2UF94	1608.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-1397753_21	936573.HMPREF1147_1705	1168.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1397753_21	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1397753_21	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1397753_21	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_22	phrog_6568	73.5	1.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-1397753_22	1203606.HMPREF1526_00241	60.8	0.0000000000196	N/A	N/A
PHROG	UHGV-1397753_24	phrog_3253	72.0	3.6e-21	N/A	unknown function
UniRef90	UHGV-1397753_24	UniRef90_UPI001C032A7B	105.0	6.75e-29	resolvase	N/A
eggNOG-mapper	UHGV-1397753_24	1151292.QEW_3282	46.6	0.00000263	N/A	N/A
structural_annotation	UHGV-1397753_24	PF18618	N/A	N/A	N/A	N/A
KOfam	UHGV-1397753_26	K03700	96.7	3.1e-28	recU; recombination protein U	N/A
PHROG	UHGV-1397753_26	phrog_843	154.9	0	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397753_26	UniRef90_UPI001C036091	326.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1397753_26	748224.HMPREF9436_03347	263.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-1397753_26	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-1397753_26	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-1397753_26	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397753_27	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_29	phrog_36	42.3	0.0000000000036	transcriptional regulator	transcription regulation
Pfam	UHGV-1397753_29	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1397753_29	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_30	phrog_620	135.4	2e-40	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397753_30	UniRef90_A0A3F3JUE2	343.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1397753_30	748224.HMPREF9436_03344	228.0	0	ParB-like nuclease domain	N/A
PADLOC	UHGV-1397753_30	MTase_II_00015	54.5	0.0000000000000024	Type II methyltransferase	RM
Pfam	UHGV-1397753_30	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1397753_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-1397753_31	phrog_887	149.9	1.54143e-44	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1397753_31	UniRef90_A0A6N7S662	253.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1397753_31	445970.ALIPUT_02667	128.0	4.05e-32	N/A	N/A
structural_annotation	UHGV-1397753_31	PF00331,MF_00168,NF040790,COG0069	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_32	phrog_27044	97.9	1e-28	N/A	unknown function
UniRef90	UHGV-1397753_32	UniRef90_A0A3F3JUD8	264.0	0	Citrulline cluster-linked protein	N/A
eggNOG-mapper	UHGV-1397753_32	428126.CLOSPI_01525	112.0	2.66e-29	N/A	N/A
Pfam	UHGV-1397753_32	PF06177	N/A	N/A	QueT transporter	QueT
COG	UHGV-1397753_32	COG4708	N/A	N/A	ECF-type transporter of queuosine precursor, membrane (S) component	N/A
structural_annotation	UHGV-1397753_32	PF06177,MF_01572,TIGR04522,COG4708	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_33	phrog_309	52.1	0.000000000000011	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-1397753_33	748224.HMPREF9436_03342	187.0	0	transposase activity	N/A
COG	UHGV-1397753_33	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-1397753_34	K06909	93.1	2.3e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1397753_34	phrog_10250	127.8	6.4e-38	N/A	unknown function
UniRef90	UHGV-1397753_34	UniRef90_E2ZNR1	603.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1397753_34	748224.HMPREF9436_03341	603.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1397753_34	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1397753_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1397753_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1397753_34	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_35	phrog_533	247.5	0	portal protein	head and packaging
UniRef90	UHGV-1397753_35	UniRef90_A0A1H7MQM5	560.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1397753_35	476272.RUMHYD_01758	403.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1397753_35	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_36	phrog_581	236.8	0	minor head protein	head and packaging
UniRef90	UHGV-1397753_36	UniRef90_A0A3D4T830	457.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1397753_36	33035.JPJF01000106_gene3134	301.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1397753_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1397753_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397753_36	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_39	phrog_1374	45.3	0.0000000000011	N/A	unknown function
UniRef90	UHGV-1397753_39	UniRef90_A0A2I6PFH1	50.8	0.000000354	Putative membrane protein	N/A
eggNOG-mapper	UHGV-1397753_39	1203606.HMPREF1526_01891	54.7	0.00000000888	N/A	N/A
structural_annotation	UHGV-1397753_39	TIGR04438	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_40	phrog_194	68.7	9.9e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-1397753_40	UniRef90_A0A1H7MPG5	177.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1397753_40	768486.EHR_02625	56.6	0.00000023	Phage minor structural protein GP20	N/A
Pfam	UHGV-1397753_40	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1397753_40	PF06810	N/A	N/A	N/A	N/A
UniRef90	UHGV-1397753_41	UniRef90_A0A0M2NI16	286.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-1397753_41	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_43	phrog_541	94.2	9.9e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-1397753_43	476272.RUMHYD_01778	118.0	6.17e-32	N/A	N/A
PHROG	UHGV-1397753_44	phrog_3366	82.2	6.4e-24	N/A	unknown function
structural_annotation	UHGV-1397753_44	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_45	phrog_556	72.9	3.3e-21	minor head protein	head and packaging
UniRef90	UHGV-1397753_45	UniRef90_A0A1H7MNM8	137.0	2.1e-38	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1397753_45	999413.HMPREF1094_00212	61.2	0.000000000936	Minor capsid protein	N/A
Pfam	UHGV-1397753_45	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1397753_45	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_46	phrog_3266	50.2	0.000000000000035	tail completion	connector
eggNOG-mapper	UHGV-1397753_46	476272.RUMHYD_01781	154.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-1397753_46	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_47	phrog_3099	124.8	5.5e-37	N/A	unknown function
eggNOG-mapper	UHGV-1397753_47	33035.JPJF01000106_gene3126	181.0	0	N/A	N/A
structural_annotation	UHGV-1397753_47	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_48	phrog_11299	87.4	1.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1397753_48	1449050.JNLE01000003_gene3883	72.4	0.000000000000111	N/A	N/A
PHROG	UHGV-1397753_49	phrog_706	134.5	6.7e-40	N/A	unknown function
UniRef90	UHGV-1397753_49	UniRef90_A0A1H7MNA7	220.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1397753_49	411459.RUMOBE_01383	194.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1397753_49	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1397753_49	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1397753_50	phrog_1535	204.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1397753_50	UniRef90_A0A1C6JAZ8	191.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1397753_50	411459.RUMOBE_01384	176.0	2.51953e-42	phage tail tape measure protein	N/A
COG	UHGV-1397753_50	COG5412	N/A	N/A	Phage-related protein	N/A