UHGV-1398735 (vOTU-157147)

Viral Genome: UHGV-1398735

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1398735
vOTU ID	vOTU-157147
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0208248
Associated BioSample	SAMEA2338811
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.84 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9654
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.31
Jumbo phage	No

Genome content
Genome length (bp)	29,430
GC content	40.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	95%
Average CDS length (bps)	715.31
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1398735_1	K00571	94.5	1.5e-27	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1398735_1	phrog_67	86.1	6.1e-26	DNA methyltransferase	other
UniRef90	UHGV-1398735_1	UniRef90_A0A2A5RI07	299.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1398735_1	35241.Q9XJE8_BPTU2	296.0	0	helicase activity	N/A
PADLOC	UHGV-1398735_1	MTase_II_00157	72.4	8.5e-22	Type II methyltransferase	RM
Pfam	UHGV-1398735_1	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
PHROG	UHGV-1398735_2	phrog_14970	218.3	0	N/A	unknown function
UniRef90	UHGV-1398735_2	UniRef90_A0A3P6JH63	163.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1398735_2	469604.HMPREF0946_00830	175.0	0	DNA recombination	N/A
COG	UHGV-1398735_2	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1398735_2	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1398735_3	K00558	189.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1398735_3	phrog_116	210.5	0	DNA methyltransferase	other
UniRef90	UHGV-1398735_3	UniRef90_R9KEA8	321.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1398735_3	397290.C810_05213	321.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1398735_3	MTase_II_00058	201.8	0	Type II methyltransferase	RM
Pfam	UHGV-1398735_3	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1398735_3	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1398735_3	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1398735_3	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_4	phrog_824	101.7	4.5e-30	N/A	unknown function
UniRef90	UHGV-1398735_4	UniRef90_A0A3D5TLJ2	91.7	2.36e-20	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1398735_4	469378.Ccur_02760	80.1	2.57e-17	VRR-NUC domain	N/A
Pfam	UHGV-1398735_4	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
UniRef90	UHGV-1398735_5	UniRef90_A0A415TX35	52.8	0.00000601	BAH domain-containing protein	N/A
structural_annotation	UHGV-1398735_5	PF11132	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_7	phrog_3136	119.8	1.2e-35	N/A	unknown function
UniRef90	UHGV-1398735_7	UniRef90_A0A3D0HBD2	103.0	4.09e-25	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1398735_7	1340434.AXVA01000037_gene4240	56.6	0.0000000266	ASCH	N/A
Pfam	UHGV-1398735_7	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1398735_7	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1398735_7	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_8	phrog_424	107.5	1.3e-31	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1398735_8	UniRef90_R6PFX4	402.0	0	Putative phage reductase	N/A
eggNOG-mapper	UHGV-1398735_8	32024.JMTI01000031_gene58	77.0	0.000000000000105	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-1398735_8	SspD_00001	52.1	0.000000000000022	SspD	SSP
COG	UHGV-1398735_8	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1398735_8	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_12	phrog_4973	45.0	0.0000000000017	N/A	unknown function
Pfam	UHGV-1398735_12	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1398735_12	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_13	phrog_398	202.1	0	N/A	unknown function
UniRef90	UHGV-1398735_13	UniRef90_UPI00137B6F1E	217.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1398735_13	1485543.JMME01000021_gene802	206.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1398735_13	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1398735_13	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_14	phrog_4897	112.3	6e-33	kinase	other
UniRef90	UHGV-1398735_14	UniRef90_A0A418MBD6	102.0	4.1e-27	N/A	N/A
eggNOG-mapper	UHGV-1398735_14	500635.MITSMUL_03175	79.7	2.2e-17	N/A	N/A
Pfam	UHGV-1398735_14	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1398735_14	PF11753	N/A	N/A	N/A	N/A
KOfam	UHGV-1398735_17	K03111	131.9	7.4e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1398735_17	phrog_44	135.0	4.9e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1398735_17	UniRef90_A0A2V2ET02	139.0	1.18e-39	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1398735_17	1042163.BRLA_c031440	110.0	2.83e-29	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1398735_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1398735_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1398735_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1398735_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1398735_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_20	phrog_19458	187.4	0	primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1398735_20	748224.HMPREF9436_03092	154.0	1.33e-40	N/A	N/A
COG	UHGV-1398735_20	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
PHROG	UHGV-1398735_21	phrog_774	42.6	0.000000000012	N/A	unknown function
structural_annotation	UHGV-1398735_21	PF10458	N/A	N/A	N/A	N/A
Pfam	UHGV-1398735_22	PF04218	N/A	N/A	CENP-B N-terminal DNA-binding domain	CENP-B_N
structural_annotation	UHGV-1398735_22	PF02796,NF040785	N/A	N/A	N/A	N/A
KOfam	UHGV-1398735_23	K06909	124.7	9.9e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1398735_23	phrog_2	69.3	8e-20	terminase large subunit	head and packaging
UniRef90	UHGV-1398735_23	UniRef90_A0A2Z4GUK2	311.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1398735_23	66692.ABC2839	70.9	0.000000000231	Terminase RNAseH like domain	N/A
Pfam	UHGV-1398735_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1398735_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1398735_23	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_24	phrog_533	117.5	8.4e-35	portal protein	head and packaging
UniRef90	UHGV-1398735_24	UniRef90_A0A2Z4GUT7	592.0	0	Portal protein	N/A
structural_annotation	UHGV-1398735_24	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_25	phrog_581	89.5	4.9e-26	minor head protein	head and packaging
UniRef90	UHGV-1398735_25	UniRef90_A0A2Z4GUI4	230.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1398735_25	997296.PB1_16234	62.4	0.0000000694	Phage minor capsid protein 2	N/A
Pfam	UHGV-1398735_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1398735_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1398735_25	PF06152,TIGR01641	N/A	N/A	N/A	N/A
UniRef90	UHGV-1398735_27	UniRef90_A0A2Z4GUC0	601.0	0	Chitobiase/beta-hexosaminidase	N/A
eggNOG-mapper	UHGV-1398735_27	1408324.JNJK01000056_gene3661	70.1	0.00000000114	Pilus formation protein N terminal region	N/A
Pfam	UHGV-1398735_27	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
COG	UHGV-1398735_27	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-1398735_27	PF05065,PF13620,MF_04119,TIGR04387,TIGR04134,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1398735_29	PF07405,TIGR01563	N/A	N/A	N/A	N/A
UniRef90	UHGV-1398735_30	UniRef90_A0A2Z4GU91	98.6	1.09e-24	Minor capsid protein	N/A
structural_annotation	UHGV-1398735_33	PF09097,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1398735_34	phrog_5302	219.5	0	tail protein	tail
eggNOG-mapper	UHGV-1398735_34	445970.ALIPUT_02628	95.9	9.29e-18	N/A	N/A
structural_annotation	UHGV-1398735_34	PF10651	N/A	N/A	N/A	N/A