UHGV-1398983 (vOTU-112233)

Viral Genome: UHGV-1398983

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1398983
vOTU ID	vOTU-112233
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0118607
Associated BioSample	SAMN05414904
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9819
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.75
Jumbo phage	No

Genome content
Genome length (bp)	17,124
GC content	59.41%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	18
CDS density	96%
Average CDS length (bps)	911.83
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1398983_1	phrog_119	72.7	4.8e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1398983_1	UniRef90_G9YSB5	147.0	1.13505e-43	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1398983_1	1235792.C808_00081	81.6	1.6e-18	HNH nucleases	N/A
Pfam	UHGV-1398983_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1398983_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1398983_2	K07319	130.1	1.9e-38	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1398983_2	phrog_498	426.8	0	DNA methyltransferase	other
UniRef90	UHGV-1398983_2	UniRef90_UPI0012DE0D94	411.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1398983_2	1423758.BN55_01455	395.0	0	DNA methylase	N/A
PADLOC	UHGV-1398983_2	MTase_II_00015	351.5	0	Type II methyltransferase	RM
Pfam	UHGV-1398983_2	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1398983_2	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1398983_2	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1398983_2	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_3	phrog_5110	60.4	2e-17	terminase small subunit	head and packaging
UniRef90	UHGV-1398983_3	UniRef90_UPI00195E8788	123.0	9.41e-33	P27 family phage terminase small subunit	N/A
Pfam	UHGV-1398983_3	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1398983_3	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_4	phrog_9	240.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1398983_4	UniRef90_UPI0018737C02	904.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1398983_4	1235792.C808_00083	595.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1398983_4	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1398983_4	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1398983_4	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1398983_4	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_5	phrog_12	117.3	4.9e-35	portal protein	head and packaging
UniRef90	UHGV-1398983_5	UniRef90_UPI0018755FA4	506.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1398983_5	610130.Closa_0742	293.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1398983_5	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1398983_5	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1398983_5	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1398983_5	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1398983_6	K01358	131.3	9.7e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1398983_6	phrog_94	246.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1398983_6	UniRef90_A0A1Y4BT12	350.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1398983_6	349161.Dred_2605	303.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1398983_6	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1398983_6	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1398983_6	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_7	phrog_10	139.7	3.09995e-41	major head protein	head and packaging
UniRef90	UHGV-1398983_7	UniRef90_G9YSC0	687.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1398983_7	1235792.C808_00086	414.0	0	Phage capsid family	N/A
Pfam	UHGV-1398983_7	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1398983_7	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1398983_7	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1398983_7	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1398983_7	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_8	phrog_749	69.1	5.4e-20	N/A	unknown function
UniRef90	UHGV-1398983_8	UniRef90_UPI001C0FB8A8	53.9	0.000000246	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1398983_8	349161.Dred_2603	76.6	6.28e-17	N/A	N/A
PHROG	UHGV-1398983_9	phrog_19734	114.2	8.2e-34	N/A	unknown function
UniRef90	UHGV-1398983_9	UniRef90_A0A6I7GNS7	126.0	5.84e-35	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1398983_9	1235798.C817_04587	58.9	0.00000000178	N/A	N/A
structural_annotation	UHGV-1398983_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1398983_10	999413.HMPREF1094_02005	83.6	2.78e-19	N/A	N/A
structural_annotation	UHGV-1398983_10	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_11	phrog_5	46.0	0.0000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-1398983_11	UniRef90_A0A1C6FG30	136.0	4.67e-38	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1398983_11	908340.HMPREF9406_2573	126.0	7.95e-35	N/A	N/A
structural_annotation	UHGV-1398983_11	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_12	phrog_88	85.6	6e-25	major tail protein	tail
UniRef90	UHGV-1398983_12	UniRef90_G9YSC5	125.0	1.28e-32	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1398983_12	33035.JPJF01000039_gene278	75.9	0.0000000000000287	N/A	N/A
NCBIFam	UHGV-1398983_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1398983_12	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_15	phrog_3981	259.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1398983_15	UniRef90_A0A373CK98	298.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-1398983_15	1216932.CM240_0625	317.0	0	tape measure	N/A
COG	UHGV-1398983_15	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1398983_15	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_16	phrog_33	71.2	2.4e-20	distal tail protein Dit	tail
UniRef90	UHGV-1398983_16	UniRef90_A0A173Z1X4	178.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1398983_16	1123263.AUKY01000068_gene490	125.0	1.48e-32	tail component	N/A
COG	UHGV-1398983_16	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1398983_16	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_17	phrog_1067	279.9	0	minor head protein	head and packaging
UniRef90	UHGV-1398983_17	UniRef90_A0A316NPB5	382.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1398983_17	1123263.AUKY01000068_gene489	302.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1398983_17	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1398983_17	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1398983_17	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1398983_17	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1398983_18	phrog_14824	79.4	2.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1398983_18	931626.Awo_c21070	114.0	2.53e-24	Cell wall-binding repeat protein	N/A
Pfam	UHGV-1398983_18	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
COG	UHGV-1398983_18	COG5434	N/A	N/A	Polygalacturonase	N/A