UHGV-1400017 (vOTU-076995)

Viral Genome: UHGV-1400017

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1400017
vOTU ID	vOTU-076995
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0257658
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.27
Jumbo phage	No

Genome content
Genome length (bp)	38,047
GC content	54.39%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	93%
Average CDS length (bps)	641.13
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1400017_1	phrog_5110	89.9	1.4e-25	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-1400017_1	1415774.U728_1256	65.5	0.0000000000125	N/A	N/A
PHROG	UHGV-1400017_2	phrog_9	252.2	0	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-1400017_2	1235792.C808_00083	630.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1400017_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1400017_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1400017_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_3	phrog_12	117.2	8.5e-34	portal protein	head and packaging
eggNOG-mapper	UHGV-1400017_3	610130.Closa_0742	337.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1400017_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1400017_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1400017_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1400017_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1400017_4	K01358	119.8	2.3e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1400017_4	phrog_94	172.0	0	head maturation protease	head and packaging
eggNOG-mapper	UHGV-1400017_4	1232452.BAIB02000007_gene1626	160.0	1.4013e-45	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1400017_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1400017_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1400017_4	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_5	phrog_10	140.8	7.59994e-41	major head protein	head and packaging
eggNOG-mapper	UHGV-1400017_5	1235792.C808_00086	484.0	0	Phage capsid family	N/A
Pfam	UHGV-1400017_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1400017_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1400017_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1400017_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1400017_5	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_6	phrog_21765	43.7	0.000000000024	N/A	unknown function
eggNOG-mapper	UHGV-1400017_6	1203606.HMPREF1526_01905	69.3	0.000000000000538	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1400017_6	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
COG	UHGV-1400017_6	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-1400017_7	phrog_749	75.5	4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1400017_7	1235792.C808_00087	80.1	3.57e-18	N/A	N/A
PHROG	UHGV-1400017_8	phrog_19734	138.8	1.6e-40	N/A	unknown function
eggNOG-mapper	UHGV-1400017_8	349161.Dred_2602	85.9	5.88e-20	N/A	N/A
NCBIFam	UHGV-1400017_8	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1400017_8	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400017_9	999413.HMPREF1094_02005	85.5	3.3e-20	N/A	N/A
structural_annotation	UHGV-1400017_9	PF05657,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400017_10	1235798.C817_04589	94.0	3.51e-22	N/A	N/A
structural_annotation	UHGV-1400017_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_11	phrog_88	108.0	7.5e-31	major tail protein	tail
eggNOG-mapper	UHGV-1400017_11	1232453.BAIF02000058_gene1628	87.4	1.67e-16	Phage major capsid protein E	N/A
Pfam	UHGV-1400017_11	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
NCBIFam	UHGV-1400017_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1400017_11	PF06488,PF18316,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400017_12	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1400017_13	K10352	53.4	0.0000000000000065	MYH9s; myosin heavy chain 9/10/11/14	N/A
PHROG	UHGV-1400017_13	phrog_23464	230.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1400017_13	33035.JPJF01000023_gene3232	224.0	0	phage tail tape measure protein	N/A
COG	UHGV-1400017_13	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1400017_14	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_15	phrog_6616	40.1	0.00000000017	tail protein	tail
eggNOG-mapper	UHGV-1400017_15	1235797.C816_04180	161.0	0	N/A	N/A
structural_annotation	UHGV-1400017_15	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_16	phrog_7121	75.5	3.1e-21	tail fiber protein	tail
eggNOG-mapper	UHGV-1400017_16	1235797.C816_04179	160.0	6.76e-41	Chaperone of endosialidase	N/A
Pfam	UHGV-1400017_16	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1400017_16	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_18	phrog_3279	53.8	0.000000000000016	tail fiber protein	tail
PHROG	UHGV-1400017_20	phrog_4105	75.9	3.8e-21	N/A	unknown function
PHROG	UHGV-1400017_21	phrog_443	59.6	6.1e-16	holin	lysis
eggNOG-mapper	UHGV-1400017_21	476272.RUMHYD_01759	82.8	4.26e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1400017_21	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1400017_21	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1400017_22	K01447	50.9	0.00000000000023	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1400017_22	phrog_7698	124.4	1.1e-35	endolysin	lysis
eggNOG-mapper	UHGV-1400017_22	1519439.JPJG01000059_gene1952	152.0	9.89036e-42	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1400017_22	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1400017_22	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1400017_22	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400017_23	1161902.HMPREF0378_1600	75.9	7.1e-17	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-1400017_23	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-1400017_23	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-1400017_24	K14059	85.9	5.6e-24	int; integrase	N/A
PHROG	UHGV-1400017_24	phrog_1	138.5	4.79999e-40	integrase	integration and excision
eggNOG-mapper	UHGV-1400017_24	693746.OBV_43340	406.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1400017_24	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1400017_24	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1400017_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1400017_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1400017_24	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400017_25	1262449.CP6013_2082	129.0	8.76e-35	N/A	N/A
Pfam	UHGV-1400017_25	PF16729	N/A	N/A	N/A	DUF5067
PHROG	UHGV-1400017_26	phrog_4980	134.7	1.7e-39	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1400017_26	33035.JPJF01000109_gene437	89.0	1.07e-17	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1400017_26	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1400017_26	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1400017_26	PF02631,MF_01114,NF001056,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-1400017_27	K01356	157.2	1.4013e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1400017_27	phrog_4	114.7	7.8e-33	transcriptional repressor	transcription regulation
eggNOG-mapper	UHGV-1400017_27	561177.ANHYDRO_01377	150.0	1.02995e-42	Peptidase S24-like	N/A
Pfam	UHGV-1400017_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1400017_27	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1400017_27	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1400017_27	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
Pfam	UHGV-1400017_28	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1400017_28	PF21291,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400017_29	693746.OBV_43260	77.0	6.66e-18	N/A	N/A
structural_annotation	UHGV-1400017_29	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_33	phrog_21613	82.1	5.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1400017_33	1007096.BAGW01000023_gene153	259.0	0	N/A	N/A
PHROG	UHGV-1400017_34	phrog_1227	205.6	0	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400017_34	1007096.BAGW01000023_gene152	371.0	0	N/A	N/A
Pfam	UHGV-1400017_34	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1400017_34	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1400017_34	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-1400017_35	K03111	124.6	9.6e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1400017_35	phrog_44	122.5	2.9e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400017_35	742738.HMPREF9460_03732	100.0	8.73e-25	Single-strand binding protein family	N/A
Pfam	UHGV-1400017_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1400017_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1400017_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1400017_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1400017_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1400017_36	K02316	74.8	9.8e-21	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1400017_36	phrog_11992	105.5	4.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-1400017_36	742738.HMPREF9460_02494	160.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-1400017_36	drt-cluster192	69.0	1.1e-19	DRT	DRT
Pfam	UHGV-1400017_36	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1400017_36	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1400017_36	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_37	phrog_8841	483.1	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400017_37	742738.HMPREF9460_02495	775.0	0	N/A	N/A
Pfam	UHGV-1400017_37	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1400017_37	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1400017_37	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400017_37	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400017_38	PF01402,NF041793,COG4453	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_41	phrog_130	107.7	1e-30	anti-repressor Ant	transcription regulation
eggNOG-mapper	UHGV-1400017_41	742738.HMPREF9460_02498	190.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1400017_41	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1400017_41	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1400017_41	PF02498,PF13560,NF041951,COG3617,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1400017_43	K17677	397.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1400017_43	phrog_16	257.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400017_43	742738.HMPREF9460_02499	746.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1400017_43	mREase_IV_00005	123.9	1.4e-36	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1400017_43	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1400017_43	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1400017_43	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1400017_43	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_44	phrog_824	119.6	1.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-1400017_44	742738.HMPREF9460_02501	150.0	1.4013e-45	VRR_NUC	N/A
Pfam	UHGV-1400017_44	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1400017_44	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-1400017_46	K01494	151.5	4.06377e-44	dcd; dCTP deaminase [EC:3.5.4.13]	N/A
PHROG	UHGV-1400017_46	phrog_1663	86.2	3.1e-24	dCTP deaminase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400017_46	1121335.Clst_0069	213.0	0	TIGRFAM deoxycytidine triphosphate deaminase	N/A
NCBIFam	UHGV-1400017_46	TIGR02274.1	N/A	N/A	dCTP deaminase	N/A
COG	UHGV-1400017_46	COG0717	N/A	N/A	dCTP deaminase	N/A
structural_annotation	UHGV-1400017_46	PF06559,MF_00146,TIGR02274,COG0717	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_47	phrog_474	110.0	2.6e-31	phosphofructokinase	other
eggNOG-mapper	UHGV-1400017_47	428125.CLOLEP_01367	101.0	8.74e-27	N/A	N/A
Pfam	UHGV-1400017_47	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1400017_47	PF19905	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400017_50	742738.HMPREF9460_04055	56.2	0.00000000889	N/A	N/A
PHROG	UHGV-1400017_53	phrog_959	47.8	0.0000000000014	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400017_53	51369.Q8LTA0_9CAUD	52.8	0.00000367	HNH endonuclease	N/A
Pfam	UHGV-1400017_53	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
structural_annotation	UHGV-1400017_53	PF13392,PF20987	N/A	N/A	N/A	N/A
PHROG	UHGV-1400017_55	phrog_119	76.5	2.6e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400017_55	1415774.U728_1257	89.7	8.37e-22	HNH nucleases	N/A
Pfam	UHGV-1400017_55	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1400017_55	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A