UHGV-1400113 (vOTU-086062)

Viral Genome: UHGV-1400113

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1400113
vOTU ID	vOTU-086062
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0331012
Associated BioSample	SAMEA2159541
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.49
Jumbo phage	No

Genome content
Genome length (bp)	59,598
GC content	49.07%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	101
CDS density	86%
Average CDS length (bps)	506.64
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1400113_1	1408437.JNJN01000043_gene802	96.3	1.34e-24	N/A	N/A
eggNOG-mapper	UHGV-1400113_2	1378168.N510_03079	95.1	6.4e-21	N/A	N/A
eggNOG-mapper	UHGV-1400113_3	1415774.U728_1699	121.0	2.63e-33	N/A	N/A
PHROG	UHGV-1400113_4	phrog_7070	113.8	3.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-1400113_4	1195072.M4HPW0_9CAUD	93.6	2.99e-23	N/A	N/A
structural_annotation	UHGV-1400113_6	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-1400113_8	K03496	236.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1400113_8	phrog_164	160.8	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400113_8	1408423.JHYA01000021_gene392	192.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1400113_8	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1400113_8	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1400113_8	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_11	phrog_4402	106.5	1.8e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400113_11	999413.HMPREF1094_04438	146.0	5.06e-38	Initiator Replication protein	N/A
Pfam	UHGV-1400113_11	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1400113_11	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1400113_11	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1400113_11	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
Pfam	UHGV-1400113_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1400113_12	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_15	phrog_8	55.5	0.000000000000011	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1400113_15	665956.HMPREF1032_02614	65.1	0.00000000000432	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1400113_15	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1400113_15	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400113_16	428125.CLOLEP_02737	59.7	0.0000000000581	N/A	N/A
structural_annotation	UHGV-1400113_16	TIGR03070	N/A	N/A	N/A	N/A
KOfam	UHGV-1400113_17	K07741	64.2	3.3e-17	antB; anti-repressor protein	N/A
PHROG	UHGV-1400113_17	phrog_130	240.7	0	anti-repressor Ant	transcription regulation
eggNOG-mapper	UHGV-1400113_17	1589749.A0A0B5A507_9CAUD	200.0	0	DNA binding	N/A
Pfam	UHGV-1400113_17	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1400113_17	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1400113_17	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400113_20	760568.Desku_0919	105.0	2.7e-25	N/A	N/A
structural_annotation	UHGV-1400113_20	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_22	PF14143	N/A	N/A	N/A	N/A
KOfam	UHGV-1400113_23	K07738	41.2	0.00000000019	nrdR; transcriptional repressor NrdR	N/A
eggNOG-mapper	UHGV-1400113_23	1132855.KB913035_gene1070	47.8	0.00000958	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
Pfam	UHGV-1400113_23	PF01096	N/A	N/A	Transcription factor S-II (TFIIS)	TFIIS_C
COG	UHGV-1400113_23	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1400113_23	PF04606,NF007241	N/A	N/A	N/A	N/A
Pfam	UHGV-1400113_25	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
COG	UHGV-1400113_25	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-1400113_25	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_26	phrog_155	148.1	4.1058e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400113_26	748224.HMPREF9436_03360	273.0	0	ERF superfamily	N/A
Pfam	UHGV-1400113_26	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1400113_26	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1400113_27	K03111	113.9	1.8e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1400113_27	phrog_44	123.0	2e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400113_27	748224.HMPREF9436_03359	148.0	5.46506e-44	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1400113_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1400113_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1400113_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1400113_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1400113_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1400113_28	K00558	167.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1400113_28	phrog_116	201.3	0	DNA methyltransferase	other
eggNOG-mapper	UHGV-1400113_28	718252.FP2_16350	612.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1400113_28	oMTase_00004	234.3	0	orphan methyltransferase	RM
Pfam	UHGV-1400113_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1400113_28	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1400113_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1400113_28	PF00145,TIGR00675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_30	PF20331,COG5264	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_31	phrog_843	62.0	5.2e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400113_31	929506.CbC4_1203	107.0	9.72e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1400113_31	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_32	phrog_30930	94.1	9.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-1400113_32	1214184.ALKY01000039_gene933	85.1	1.58e-19	N/A	N/A
structural_annotation	UHGV-1400113_32	PF05037	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_34	PF11998,COG5420	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_39	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_40	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_41	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400113_42	596327.PORUE0001_0850	191.0	0	restriction	N/A
PADLOC	UHGV-1400113_42	MTase_II_00176	144.7	0	Type II methyltransferase	RM
COG	UHGV-1400113_42	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
PHROG	UHGV-1400113_43	phrog_3136	152.1	1.12104e-44	N/A	unknown function
eggNOG-mapper	UHGV-1400113_43	394503.Ccel_3165	60.8	0.00000000107	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1400113_43	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1400113_43	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_45	PF01775,MF_00273,NF001981	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_53	phrog_678	42.5	0.000000000089	replication initiation O-like	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1400113_53	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1400113_53	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1400113_54	K02314	212.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1400113_54	phrog_19	222.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400113_54	1203606.HMPREF1526_01325	169.0	4.2039e-45	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1400113_54	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1400113_54	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1400113_54	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_57	phrog_434	42.8	0.000000000065	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400113_57	88870.Q9ZX24_BPMT4	49.3	0.00000168	N/A	N/A
PHROG	UHGV-1400113_61	phrog_14275	56.8	0.0000000000000023	N/A	unknown function
eggNOG-mapper	UHGV-1400113_61	1280676.AUJO01000001_gene2313	65.1	0.000000000821	N/A	N/A
Pfam	UHGV-1400113_61	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1400113_61	PF13157,MF_01537,NF007875,COG3123	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_62	PF12869,MF_00720,NF040991,COG4085	N/A	N/A	N/A	N/A
KOfam	UHGV-1400113_64	K07741	47.1	0.0000000000057	antB; anti-repressor protein	N/A
PHROG	UHGV-1400113_64	phrog_63	149.2	2.29813e-43	anti-repressor Ant	transcription regulation
eggNOG-mapper	UHGV-1400113_64	947981.E9LUT0_9CAUD	181.0	0	DNA binding	N/A
Pfam	UHGV-1400113_64	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1400113_64	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-1400113_64	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-1400113_64	PF09669,PF03374,TIGR02681,COG3646,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_65	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_67	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
KOfam	UHGV-1400113_69	K14060	146.8	1.3999e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1400113_69	phrog_125	175.1	0	DNA invertase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400113_69	1280664.AUIX01000018_gene2067	214.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1400113_69	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1400113_69	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1400113_69	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_70	phrog_3675	79.9	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1400113_70	1235802.C823_04879	114.0	1.13e-31	YjcQ protein	N/A
Pfam	UHGV-1400113_70	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1400113_70	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_71	phrog_38	155.7	1.4013e-45	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-1400113_71	1232453.BAIF02000058_gene1623	392.0	0	TIGRFAM Phage	N/A
COG	UHGV-1400113_71	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_71	PF05203,PF17289,MF_04147,MF_01420,NF033889,NF007072,COG5362,COG1372	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_74	phrog_64	153.3	8.40779e-45	portal protein	head and packaging
eggNOG-mapper	UHGV-1400113_74	1121866.AUGK01000003_gene1429	287.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1400113_74	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1400113_74	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_78	phrog_29	183.5	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1400113_78	1347368.HG964404_gene4993	259.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1400113_78	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1400113_78	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400113_79	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400113_80	1298920.KI911353_gene2656	51.2	0.00000237	N/A	N/A
structural_annotation	UHGV-1400113_80	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400113_81	476272.RUMHYD_01963	58.2	0.0000000377	N/A	N/A
structural_annotation	UHGV-1400113_82	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_83	phrog_158	46.2	0.0000000000063	major tail protein	tail
eggNOG-mapper	UHGV-1400113_83	1449343.JQLQ01000002_gene1514	55.1	0.000000206	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1400113_83	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400113_84	1123263.AUKY01000015_gene1618	59.3	0.000000000769	N/A	N/A
Pfam	UHGV-1400113_84	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1400113_84	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400113_85	1121333.JMLH01000047_gene1011	77.8	1.95e-16	N/A	N/A
PHROG	UHGV-1400113_86	phrog_1535	143.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1400113_86	1121866.AUGK01000003_gene1437	197.0	0	phage tail tape measure protein	N/A
COG	UHGV-1400113_86	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1400113_87	phrog_1194	77.8	9.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-1400113_87	665956.HMPREF1032_03629	50.4	0.0000045	N/A	N/A
Pfam	UHGV-1400113_87	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1400113_87	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_88	phrog_13879	237.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1400113_88	1122919.KB905559_gene1344	156.0	9.39e-38	N/A	N/A
Pfam	UHGV-1400113_88	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1400113_88	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_89	phrog_18725	65.8	5.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1400113_89	693746.OBV_18220	73.9	0.0000000000000146	N/A	N/A
KOfam	UHGV-1400113_91	K07273	172.0	0	acm; lysozyme	N/A
PHROG	UHGV-1400113_91	phrog_291	131.3	6.1e-38	endolysin	lysis
eggNOG-mapper	UHGV-1400113_91	718252.FP2_04890	225.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1400113_91	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1400113_91	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1400113_91	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1400113_93	phrog_15303	116.8	8e-34	N/A	unknown function
Pfam	UHGV-1400113_93	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-1400113_94	K24213	94.2	7.7e-27	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1400113_94	phrog_5073	127.9	5.7e-37	tail fiber protein	tail
eggNOG-mapper	UHGV-1400113_94	411483.FAEPRAA2165_00757	174.0	0	N/A	N/A
Pfam	UHGV-1400113_94	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1400113_100	phrog_16490	102.3	1.5e-38	N/A	unknown function
eggNOG-mapper	UHGV-1400113_100	1408437.JNJN01000043_gene803	159.0	4.2039e-45	N/A	N/A