UHGV-1401991 (vOTU-145611)

Viral Genome: UHGV-1401991

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1401991
vOTU ID	vOTU-145611
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0203476
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.85 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.84
Jumbo phage	No

Genome content
Genome length (bp)	28,592
GC content	51.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	99%
Average CDS length (bps)	614.22
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1401991_1	phrog_7713	46.3	0.00000000000039	N/A	unknown function
Pfam	UHGV-1401991_1	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
COG	UHGV-1401991_1	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1401991_1	PF13599,NF000349	N/A	N/A	N/A	N/A
KOfam	UHGV-1401991_2	K22300	60.7	3.2e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1401991_2	UniRef90_UPI00192D3F61	52.4	0.000000472	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1401991_2	1388763.O165_006450	52.0	0.000000454	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1401991_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1401991_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-1401991_4	K00558	164.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1401991_4	phrog_116	195.9	0	DNA methyltransferase	other
UniRef90	UHGV-1401991_4	UniRef90_D4JYK0	365.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1401991_4	718252.FP2_16350	365.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1401991_4	oMTase_00004	207.0	0	orphan methyltransferase	RM
Pfam	UHGV-1401991_4	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1401991_4	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1401991_4	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1401991_4	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1401991_8	K19171	45.0	4e-24	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1401991_8	phrog_77	210.7	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1401991_8	UniRef90_UPI001959E3D8	384.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1401991_8	666686.B1NLA3E_01100	303.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1401991_8	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1401991_8	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1401991_8	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_9	phrog_862	91.6	1.2e-26	N/A	unknown function
UniRef90	UHGV-1401991_9	UniRef90_A0A2P9FIG4	85.1	1.24e-16	N/A	N/A
eggNOG-mapper	UHGV-1401991_9	1203606.HMPREF1526_00310	129.0	1.32e-34	N/A	N/A
structural_annotation	UHGV-1401991_9	PF05037,COG2965	N/A	N/A	N/A	N/A
KOfam	UHGV-1401991_10	K06167	63.6	2.7e-18	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1401991_10	phrog_392	171.0	0	metal-dependent hydrolase	other
UniRef90	UHGV-1401991_10	UniRef90_A0A3A9HYL3	205.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1401991_10	1203606.HMPREF1526_00311	172.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1401991_10	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1401991_10	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1401991_10	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1401991_11	742740.HMPREF9474_03492	55.1	0.0000051	DnaD domain protein	N/A
Pfam	UHGV-1401991_11	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1401991_11	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1401991_11	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1401991_14	K03111	88.2	1.6e-25	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1401991_14	phrog_44	95.6	7e-28	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1401991_14	UniRef90_A0A1V5TUN0	88.2	1.77e-19	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1401991_14	1141106.CAIB01000118_gene966	73.9	0.0000000000000134	Single-strand binding protein family	N/A
Pfam	UHGV-1401991_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1401991_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1401991_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1401991_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1401991_17	268407.PWYN_00235	82.8	2.33e-17	N/A	N/A
KOfam	UHGV-1401991_18	K03465	279.6	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-1401991_18	phrog_85	176.3	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1401991_18	UniRef90_R5Q0K8	281.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-1401991_18	1408437.JNJN01000007_gene942	281.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-1401991_18	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-1401991_18	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-1401991_18	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
HAMAP	UHGV-1401991_18	MF_01408	N/A	N/A	Flavin-dependent thymidylate synthase [thyX]	N/A
structural_annotation	UHGV-1401991_18	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_19	phrog_18716	154.1	0	N/A	unknown function
UniRef90	UHGV-1401991_19	UniRef90_A0A7X7HJW5	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-1401991_19	1029718.SFBM_0379	126.0	5.56e-35	N/A	N/A
Pfam	UHGV-1401991_19	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1401991_19	PF18909	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1401991_22	PF05129,NF007260	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1401991_23	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_24	phrog_36	72.2	7.7e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1401991_24	UniRef90_A0A6P1MHJ4	114.0	2.88e-29	N/A	N/A
eggNOG-mapper	UHGV-1401991_24	1540257.JQMW01000004_gene433	138.0	1.32e-39	N/A	N/A
PHROG	UHGV-1401991_25	phrog_606	63.0	5.7e-19	terminase small subunit	head and packaging
UniRef90	UHGV-1401991_25	UniRef90_UPI00195648BB	115.0	1.24e-30	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1401991_25	397290.C810_05185	93.6	2.28e-22	DNA-packaging protein gp3	N/A
Pfam	UHGV-1401991_25	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1401991_25	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1401991_26	K06909	140.8	1.29998e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1401991_26	phrog_2	106.7	3.7e-31	terminase large subunit	head and packaging
UniRef90	UHGV-1401991_26	UniRef90_A0A0X8VAD6	518.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1401991_26	1449050.JNLE01000003_gene3895	392.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1401991_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1401991_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1401991_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1401991_26	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_27	phrog_533	403.8	0	portal protein	head and packaging
UniRef90	UHGV-1401991_27	UniRef90_A0A6N3AB16	580.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-1401991_27	428125.CLOLEP_01803	562.0	0	N/A	N/A
Pfam	UHGV-1401991_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1401991_27	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1401991_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_28	phrog_581	271.1	0	minor head protein	head and packaging
UniRef90	UHGV-1401991_28	UniRef90_A7VTB0	308.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1401991_28	428125.CLOLEP_01802	308.0	0	N/A	N/A
Pfam	UHGV-1401991_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1401991_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1401991_28	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_30	phrog_422	326.6	0	major head protein	head and packaging
UniRef90	UHGV-1401991_30	UniRef90_A0A316T938	374.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1401991_30	428125.CLOLEP_00183	379.0	0	COG NOG28280 non supervised orthologous group	N/A
structural_annotation	UHGV-1401991_30	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_31	phrog_541	79.7	3.2e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-1401991_31	1497679.EP56_07555	60.1	0.00000000109	N/A	N/A
structural_annotation	UHGV-1401991_32	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_33	phrog_556	67.4	2e-19	minor head protein	head and packaging
UniRef90	UHGV-1401991_33	UniRef90_A0A6A7K9U7	107.0	9.58e-28	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1401991_33	428125.CLOLEP_00180	92.8	7.13e-23	Minor capsid protein	N/A
Pfam	UHGV-1401991_33	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1401991_33	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_34	phrog_913	47.6	0.00000000000024	minor head protein	head and packaging
structural_annotation	UHGV-1401991_34	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_35	phrog_820	106.8	1.5e-31	major tail protein	tail
UniRef90	UHGV-1401991_35	UniRef90_A0A3A6EPU8	119.0	1.39e-30	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1401991_35	428125.CLOLEP_00178	186.0	0	Belongs to the glycosyl hydrolase family 6	N/A
COG	UHGV-1401991_35	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1401991_35	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_37	phrog_706	138.8	2.89999e-41	N/A	unknown function
UniRef90	UHGV-1401991_37	UniRef90_A0A143ZUS4	127.0	1.25e-33	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1401991_37	1231057.AMGD01000018_gene3611	102.0	1.13e-24	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1401991_37	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1401991_37	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_38	phrog_9959	116.6	1.6e-35	tail length tape measure protein	tail
UniRef90	UHGV-1401991_38	UniRef90_A0A3A6E908	134.0	3.5e-30	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1401991_38	1492737.FEM08_12070	142.0	7.82e-34	tape measure	N/A
Pfam	UHGV-1401991_38	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1401991_38	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1401991_38	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1401991_39	phrog_1535	52.3	0.0000000000000042	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1401991_40	509191.AEDB02000075_gene2803	99.8	1.57e-19	N/A	N/A
structural_annotation	UHGV-1401991_40	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_41	phrog_5417	51.5	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1401991_41	1094508.Tsac_2414	72.8	0.0000000000000467	N/A	N/A
structural_annotation	UHGV-1401991_41	PF12571	N/A	N/A	N/A	N/A
PHROG	UHGV-1401991_44	phrog_30034	74.4	2e-21	N/A	unknown function
UniRef90	UHGV-1401991_44	UniRef90_A0A8D9UHK2	143.0	2.61e-40	Chitin oligosaccharide deacetylase	N/A
eggNOG-mapper	UHGV-1401991_44	1235796.C815_00903	102.0	2.47e-25	N/A	N/A
Pfam	UHGV-1401991_44	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1401991_44	PF14600	N/A	N/A	N/A	N/A
KOfam	UHGV-1401991_46	K07273	174.7	0	acm; lysozyme	N/A
PHROG	UHGV-1401991_46	phrog_291	131.5	8.1e-39	endolysin	lysis
UniRef90	UHGV-1401991_46	UniRef90_C0EHW9	124.0	4.42e-30	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1401991_46	537013.CLOSTMETH_03464	124.0	7.41e-31	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1401991_46	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1401991_46	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1401991_46	PF01183,MF_02227,TIGR04303,COG3757	N/A	N/A	N/A	N/A