UHGV-1403242 (vOTU-087399)

Viral Genome: UHGV-1403242

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1403242
vOTU ID	vOTU-087399
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0196355
Associated BioSample	SAMEA4431968
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.96 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.16
Jumbo phage	No

Genome content
Genome length (bp)	27,325
GC content	55.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	89%
Average CDS length (bps)	530.02
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.96)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1403242_3	phrog_17977	43.9	0.0000000000032	N/A	unknown function
UniRef90	UHGV-1403242_3	UniRef90_A0A844DHJ8	119.0	1.63e-32	Phage head closure protein	N/A
structural_annotation	UHGV-1403242_3	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1403242_4	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1403242_5	phrog_885	53.3	0.0000000000000029	major tail protein	tail
eggNOG-mapper	UHGV-1403242_5	1504822.CCNO01000012_gene492	97.1	1.92e-22	N/A	N/A
structural_annotation	UHGV-1403242_5	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1403242_8	phrog_9959	88.9	3.1e-26	tail length tape measure protein	tail
UniRef90	UHGV-1403242_8	UniRef90_A0A844DDD5	521.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1403242_8	1492737.FEM08_12070	146.0	6.17e-34	tape measure	N/A
Pfam	UHGV-1403242_8	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1403242_8	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1403242_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1403242_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1403242_9	phrog_3558	274.5	0	tail protein	tail
UniRef90	UHGV-1403242_9	UniRef90_UPI001C01D15B	681.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1403242_9	1120933.ATUY01000002_gene164	156.0	9.66e-38	Prophage endopeptidase tail	N/A
Pfam	UHGV-1403242_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1403242_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1403242_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1403242_10	1235792.C808_00094	89.7	1.42e-19	phage tail	N/A
COG	UHGV-1403242_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1403242_10	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1403242_11	phrog_5302	132.1	3.5e-40	tail protein	tail
UniRef90	UHGV-1403242_11	UniRef90_UPI001CBAF2B2	409.0	0	carboxypeptidase-like regulatory domain-containing protein	N/A
eggNOG-mapper	UHGV-1403242_11	1203606.HMPREF1526_00261	537.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1403242_11	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1403242_11	PF12985	N/A	N/A	N/A	N/A
KOfam	UHGV-1403242_12	K00986	103.4	2.5e-30	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1403242_12	phrog_1423	183.4	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1403242_12	UniRef90_R8W3R1	597.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1403242_12	1203606.HMPREF1526_00259	597.0	0	COG COG3344 Retron-type reverse transcriptase	N/A
PADLOC	UHGV-1403242_12	icity0040	68.4	1.5e-19	RT (reverse transcriptase)	CRISPR-CAS
COG	UHGV-1403242_12	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1403242_12	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
UniRef90	UHGV-1403242_13	UniRef90_A0A2J4JSG1	84.3	1.8e-20	XkdX family protein	N/A
eggNOG-mapper	UHGV-1403242_13	718252.FP2_16990	82.8	1.2e-20	Phage uncharacterised protein (Phage_XkdX)	N/A
structural_annotation	UHGV-1403242_13	PF09693	N/A	N/A	N/A	N/A
KOfam	UHGV-1403242_14	K07273	161.3	0	acm; lysozyme	N/A
PHROG	UHGV-1403242_14	phrog_291	117.8	1e-34	endolysin	lysis
UniRef90	UHGV-1403242_14	UniRef90_A0A564U0D3	466.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1403242_14	718252.FP2_04890	249.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1403242_14	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1403242_14	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1403242_14	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1403242_15	phrog_1863	76.0	2.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-1403242_15	718252.FP2_04900	155.0	0	N/A	N/A
PHROG	UHGV-1403242_16	phrog_15303	75.8	4.8e-22	N/A	unknown function
structural_annotation	UHGV-1403242_18	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1403242_19	K23779	55.8	0.0000000000000011	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1403242_19	phrog_1373	42.2	0.00000000001	transcriptional regulator	transcription regulation
Pfam	UHGV-1403242_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1403242_19	COG1309	N/A	N/A	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	N/A
structural_annotation	UHGV-1403242_19	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1403242_21	phrog_3754	96.5	2.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-1403242_21	1235790.C805_00054	110.0	9.17e-30	N/A	N/A
PHROG	UHGV-1403242_22	phrog_21718	113.7	1.3e-33	N/A	unknown function
eggNOG-mapper	UHGV-1403242_22	397290.C810_05210	97.1	2.37e-23	N/A	N/A
PHROG	UHGV-1403242_23	phrog_22984	79.9	8.1e-24	N/A	unknown function
PHROG	UHGV-1403242_24	phrog_16490	159.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1403242_24	1408437.JNJN01000043_gene803	119.0	7.88e-30	N/A	N/A
PHROG	UHGV-1403242_25	phrog_20016	199.3	0	N/A	unknown function
UniRef90	UHGV-1403242_25	UniRef90_A0A285PT46	210.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1403242_25	1226322.HMPREF1545_00077	181.0	0	N/A	N/A
structural_annotation	UHGV-1403242_25	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1403242_26	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1403242_28	K14059	147.4	1.59748e-43	int; integrase	N/A
PHROG	UHGV-1403242_28	phrog_1	171.2	0	integrase	integration and excision
UniRef90	UHGV-1403242_28	UniRef90_A0A174D176	395.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-1403242_28	411471.SUBVAR_05137	244.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1403242_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1403242_28	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1403242_28	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1403242_29	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1403242_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1403242_29	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1403242_32	321955.AAGP01000017_gene2211	56.6	0.000000155	N/A	N/A
structural_annotation	UHGV-1403242_32	PF16900,NF040991	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1403242_35	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
KOfam	UHGV-1403242_36	K07727	46.5	0.00000000000077	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-1403242_36	phrog_8	51.6	0.00000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-1403242_36	UniRef90_A0A2V2GTH3	72.0	0.000000000000101	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1403242_36	411460.RUMTOR_02056	54.3	0.000000206	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1403242_36	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1403242_36	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1403242_36	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1403242_37	phrog_1468	46.3	0.00000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-1403242_37	UniRef90_UPI000CF638BB	67.4	0.000000000000316	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1403242_37	428125.CLOLEP_02737	55.5	0.00000000293	N/A	N/A
structural_annotation	UHGV-1403242_37	PF13443,NF000090,COG1813	N/A	N/A	N/A	N/A
PHROG	UHGV-1403242_41	phrog_463	220.7	0	anti-repressor	transcription regulation
UniRef90	UHGV-1403242_41	UniRef90_A0A6N2RMJ9	268.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1403242_41	411490.ANACAC_00813	234.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1403242_41	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1403242_41	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1403242_41	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1403242_41	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1403242_42	phrog_4433	164.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1403242_42	33035.JPJF01000122_gene2458	103.0	8.8e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1403242_42	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1403242_42	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1403242_43	PF10743,NF033787	N/A	N/A	N/A	N/A