UHGV-1404073 (vOTU-067532)

Viral Genome: UHGV-1404073

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1404073
vOTU ID	vOTU-067532
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0203398
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.32 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9602
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.25
Jumbo phage	No

Genome content
Genome length (bp)	28,576
GC content	27.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	94%
Average CDS length (bps)	537.18
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1404073_1	phrog_119	57.6	1.8e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1404073_1	UniRef90_W9E7Y3	97.1	8.53e-24	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1404073_1	1094508.Tsac_2429	97.1	1.43e-24	HNH nucleases	N/A
COG	UHGV-1404073_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1404073_4	phrog_709	46.9	0.00000000000044	N/A	unknown function
structural_annotation	UHGV-1404073_4	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_5	phrog_36	62.4	7.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1404073_5	UniRef90_R6SME5	138.0	2.01e-38	DNA-directed RNA polymerase specialized sigma subunit sigma24	N/A
eggNOG-mapper	UHGV-1404073_5	318464.IO99_13795	100.0	2.77e-24	DNA-templated transcription, initiation	N/A
COG	UHGV-1404073_5	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1404073_5	PF06530,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_6	phrog_8470	129.7	3.22299e-44	N/A	unknown function
UniRef90	UHGV-1404073_6	UniRef90_UPI00165E2CD5	94.0	7.41e-17	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1404073_6	1256908.HMPREF0373_02105	107.0	5.57e-22	PcfJ-like protein	N/A
Pfam	UHGV-1404073_6	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1404073_6	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_7	phrog_7445	66.6	3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1404073_7	1232449.BAHV02000018_gene1541	62.8	0.000000000392	PcfK-like protein	N/A
Pfam	UHGV-1404073_7	PF14058	N/A	N/A	PcfK-like protein	PcfK
PHROG	UHGV-1404073_9	phrog_18984	46.3	0.00000000000042	N/A	unknown function
eggNOG-mapper	UHGV-1404073_9	742740.HMPREF9474_02296	47.4	0.00000376	N/A	N/A
KOfam	UHGV-1404073_20	K04763	77.4	2.2e-22	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1404073_20	phrog_216	115.6	3e-34	integrase	integration and excision
UniRef90	UHGV-1404073_20	UniRef90_R7ID34	280.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1404073_20	1232446.BAIE02000002_gene805	270.0	0	Integrase	N/A
Pfam	UHGV-1404073_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1404073_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1404073_20	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1404073_21	UniRef90_A0A7X6P6Q9	58.5	0.00000000516	DNA gyrase	N/A
eggNOG-mapper	UHGV-1404073_21	445972.ANACOL_03346	52.8	0.000000147	N/A	N/A
structural_annotation	UHGV-1404073_21	PF03551,TIGR02719,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-1404073_22	K02086	53.9	0.0000000000000021	dnaD; DNA replication protein	N/A
PHROG	UHGV-1404073_22	phrog_186	63.8	3e-18	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1404073_22	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1404073_22	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
KOfam	UHGV-1404073_25	K14056	40.3	0.000000000046	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
eggNOG-mapper	UHGV-1404073_25	1236508.BAKF01000001_gene163	47.8	0.00000422	transcriptional regulator	N/A
Pfam	UHGV-1404073_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1404073_25	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-1404073_25	PF12844,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1404073_26	K01356	85.1	1.1e-24	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1404073_26	phrog_4	95.3	6.9e-28	transcriptional repressor	transcription regulation
UniRef90	UHGV-1404073_26	UniRef90_A0A542AKA2	118.0	1.73e-29	Repressor LexA	N/A
eggNOG-mapper	UHGV-1404073_26	1321820.HMPREF1983_00958	119.0	4.33e-30	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1404073_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1404073_26	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1404073_26	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1404073_26	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
Pfam	UHGV-1404073_27	PF08792	N/A	N/A	A2L zinc ribbon domain	A2L_zn_ribbon
structural_annotation	UHGV-1404073_27	TIGR04165,COG3478	N/A	N/A	N/A	N/A
KOfam	UHGV-1404073_28	K14059	115.9	5.5e-34	int; integrase	N/A
PHROG	UHGV-1404073_28	phrog_1	95.1	8.7e-28	integrase	integration and excision
UniRef90	UHGV-1404073_28	UniRef90_R7IG47	265.0	0	Putative phage integrase	N/A
eggNOG-mapper	UHGV-1404073_28	1443125.Z962_07700	69.7	0.000000000264	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1404073_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1404073_28	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1404073_28	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1404073_29	K01447	59.8	5.5e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1404073_29	phrog_7698	188.9	0	endolysin	lysis
UniRef90	UHGV-1404073_29	UniRef90_A0A3C1LWK8	266.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1404073_29	1123315.AUIP01000001_gene1438	230.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-1404073_29	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1404073_29	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-1404073_29	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1404073_29	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-1404073_32	phrog_689	59.2	6e-17	holin	lysis
UniRef90	UHGV-1404073_32	UniRef90_A0A2X2Y6S8	63.2	0.0000000000159	N/A	N/A
eggNOG-mapper	UHGV-1404073_32	1230342.CTM_01534	60.1	0.0000000000437	Haemolysin XhlA	N/A
Pfam	UHGV-1404073_32	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
PHROG	UHGV-1404073_35	phrog_24267	101.0	1.4e-29	N/A	unknown function
UniRef90	UHGV-1404073_35	UniRef90_R5LJS3	102.0	6.75e-25	Phage structural protein	N/A
eggNOG-mapper	UHGV-1404073_35	1123302.KB904167_gene530	109.0	1.16e-25	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-1404073_35	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1404073_35	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_38	phrog_1067	437.6	0	minor head protein	head and packaging
UniRef90	UHGV-1404073_38	UniRef90_UPI0006925FC0	367.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1404073_38	1408823.AXUS01000025_gene2634	317.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1404073_38	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-1404073_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1404073_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1404073_38	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1404073_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_39	phrog_33	81.7	1.4e-23	distal tail protein Dit	tail
UniRef90	UHGV-1404073_39	UniRef90_A0A1M6EV13	129.0	2.29e-33	Putative phage tail component, N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1404073_39	536233.CLO_1433	67.8	0.0000000000692	tail component	N/A
COG	UHGV-1404073_39	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1404073_39	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_40	phrog_6900	270.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1404073_40	665950.HMPREF1025_02522	275.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1404073_40	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1404073_40	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_41	phrog_88	169.5	0	major tail protein	tail
UniRef90	UHGV-1404073_41	UniRef90_A0A1E8RGF9	171.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1404073_41	1111134.HMPREF1253_0377	160.0	0	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1404073_41	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1404073_41	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_42	phrog_78	41.8	0.00000000002	tail terminator	connector
UniRef90	UHGV-1404073_42	UniRef90_A0A0Z8KW16	67.0	0.00000000000289	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-1404073_42	759913.SDSE_1372	73.6	0.00000000000000142	N/A	N/A
structural_annotation	UHGV-1404073_42	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1404073_43	UniRef90_A0A843HQ28	141.0	4.77002e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1404073_43	1121871.AUAT01000030_gene1030	87.8	1.3e-20	N/A	N/A
structural_annotation	UHGV-1404073_43	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_44	phrog_1951	81.4	7.9e-24	head-tail adaptor	connector
UniRef90	UHGV-1404073_44	UniRef90_UPI001F08F7B1	62.8	0.000000000115	phage head closure protein	N/A
eggNOG-mapper	UHGV-1404073_44	573061.Clocel_2434	62.0	0.0000000000359	head-tail adaptor	N/A
Pfam	UHGV-1404073_44	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1404073_44	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1404073_44	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1404073_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_45	phrog_5223	52.7	0.0000000000000056	neck protein	connector
eggNOG-mapper	UHGV-1404073_45	931276.Cspa_c10180	54.7	0.0000000139	N/A	N/A
structural_annotation	UHGV-1404073_45	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_46	phrog_10	105.7	5.3e-31	major head protein	head and packaging
UniRef90	UHGV-1404073_46	UniRef90_A0A843HUX6	280.0	0	Phage major capsid protein	N/A
Pfam	UHGV-1404073_46	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1404073_46	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1404073_46	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1404073_47	K06904	107.9	1.2e-31	N/A	N/A
PHROG	UHGV-1404073_47	phrog_80	128.9	5.8e-38	head maturation protease	head and packaging
UniRef90	UHGV-1404073_47	UniRef90_V9H369	157.0	2.8026e-45	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1404073_47	457396.CSBG_01048	157.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1404073_47	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1404073_47	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1404073_47	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1404073_47	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_48	phrog_12	170.8	0	portal protein	head and packaging
UniRef90	UHGV-1404073_48	UniRef90_W9EA43	321.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1404073_48	1094508.Tsac_2426	321.0	0	Portal protein	N/A
Pfam	UHGV-1404073_48	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1404073_48	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1404073_48	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_49	phrog_9	414.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1404073_49	UniRef90_UPI001CFF08E1	583.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1404073_49	1094508.Tsac_2427	573.0	0	Phage Terminase	N/A
Pfam	UHGV-1404073_49	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1404073_49	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1404073_49	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1404073_49	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1404073_50	phrog_1066	63.3	3.7e-18	N/A	unknown function
UniRef90	UHGV-1404073_50	UniRef90_W0U724	67.0	0.00000000000608	Phage terminase-like protein, small subunit	N/A
eggNOG-mapper	UHGV-1404073_50	1160721.RBI_I01586	67.0	0.00000000000102	N/A	N/A
structural_annotation	UHGV-1404073_50	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A