UHGV-1405804 (vOTU-024783)

Viral Genome: UHGV-1405804

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1405804
vOTU ID	vOTU-024783
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0184208
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.17 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9787
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.65
Jumbo phage	No

Genome content
Genome length (bp)	25,314
GC content	43.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	91%
Average CDS length (bps)	521.11
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.17)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1405804_1	phrog_2232	175.0	0	N/A	unknown function
UniRef90	UHGV-1405804_1	UniRef90_A0A416HMK4	331.0	0	N/A	N/A
eggNOG-mapper	UHGV-1405804_1	1235802.C823_03705	312.0	0	N/A	N/A
Pfam	UHGV-1405804_1	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-1405804_1	PF14337,TIGR03899	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1405804_2	PF16826	N/A	N/A	N/A	N/A
UniRef90	UHGV-1405804_3	UniRef90_A0A413WS40	108.0	4.23e-30	Ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-1405804_3	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1405804_3	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
UniRef90	UHGV-1405804_5	UniRef90_UPI00164D7607	62.0	0.0000000000326	N/A	N/A
KOfam	UHGV-1405804_6	K03733	188.4	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-1405804_6	phrog_1	144.0	1.3999e-42	integrase	integration and excision
UniRef90	UHGV-1405804_6	UniRef90_UPI0018A0344F	671.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1405804_6	657309.BXY_36580	236.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1405804_6	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1405804_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1405804_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1405804_6	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_7	phrog_25231	49.3	0.000000000000067	N/A	unknown function
structural_annotation	UHGV-1405804_7	PF04936	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_8	phrog_6568	78.4	5.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-1405804_8	742740.HMPREF9474_02283	57.4	0.000000000267	N/A	N/A
PHROG	UHGV-1405804_9	phrog_36	49.9	0.000000000000055	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1405804_9	861454.HMPREF9099_00530	51.6	0.00000346	sigma factor activity	N/A
COG	UHGV-1405804_9	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1405804_9	PF07374,MF_00674,NF005248,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1405804_10	K04763	118.0	1.2e-34	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1405804_10	phrog_216	178.1	0	integrase	integration and excision
UniRef90	UHGV-1405804_10	UniRef90_A0A174XIE7	362.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-1405804_10	1235793.C809_02656	234.0	0	PFAM Phage integrase family	N/A
Pfam	UHGV-1405804_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1405804_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1405804_10	PF00589,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_12	phrog_119	54.0	0.0000000000000024	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1405804_12	UniRef90_A0A174XSZ8	253.0	0	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-1405804_12	318464.IO99_13775	128.0	4.36e-37	HNH nucleases	N/A
COG	UHGV-1405804_12	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1405804_13	phrog_1066	88.6	4.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-1405804_13	1235793.C809_01916	169.0	0	N/A	N/A
structural_annotation	UHGV-1405804_13	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_14	phrog_9	397.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1405804_14	UniRef90_A0A174XWB0	1158.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1405804_14	1235793.C809_01917	891.0	0	Phage Terminase	N/A
Pfam	UHGV-1405804_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1405804_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1405804_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1405804_14	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_15	phrog_12	194.1	0	portal protein	head and packaging
UniRef90	UHGV-1405804_15	UniRef90_A0A174XIL2	829.0	0	Prophage lambdaBa04, portal protein	N/A
eggNOG-mapper	UHGV-1405804_15	1235793.C809_01918	514.0	0	Phage portal protein	N/A
Pfam	UHGV-1405804_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1405804_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1405804_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1405804_16	K01358	134.4	1.2e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1405804_16	phrog_94	217.9	0	head maturation protease	head and packaging
UniRef90	UHGV-1405804_16	UniRef90_A0A174XQS2	460.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1405804_16	1280689.AUJC01000011_gene1520	217.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1405804_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1405804_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1405804_16	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_17	phrog_10	173.8	0	major head protein	head and packaging
UniRef90	UHGV-1405804_17	UniRef90_A0A174XIH6	756.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-1405804_17	1280689.AUJC01000011_gene1521	451.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1405804_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1405804_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1405804_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1405804_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_18	phrog_5223	70.6	1.6e-20	neck protein	connector
UniRef90	UHGV-1405804_18	UniRef90_A0A174XSK5	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-1405804_18	411465.PEPMIC_00737	87.0	2.41e-21	N/A	N/A
structural_annotation	UHGV-1405804_18	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1405804_19	596315.HMPREF0634_0222	48.5	0.0000071	head-tail adaptor	N/A
COG	UHGV-1405804_19	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1405804_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1405804_20	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1405804_21	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_22	phrog_88	102.8	3.1e-30	major tail protein	tail
UniRef90	UHGV-1405804_22	UniRef90_A0A174XIJ5	371.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-1405804_22	742740.HMPREF9474_04299	237.0	0	N/A	N/A
NCBIFam	UHGV-1405804_22	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1405804_22	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_25	phrog_33680	180.8	0	N/A	unknown function
UniRef90	UHGV-1405804_25	UniRef90_A0A174XMM8	521.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-1405804_25	742740.HMPREF9474_04296	617.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1405804_25	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1405804_25	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_26	phrog_37549	104.2	1.4e-31	virion structural protein	head and packaging
UniRef90	UHGV-1405804_26	UniRef90_UPI00189CF998	1082.0	0	DNRLRE domain-containing protein	N/A
eggNOG-mapper	UHGV-1405804_26	796940.HMPREF9628_00134	63.2	0.000000173	N/A	N/A
NCBIFam	UHGV-1405804_26	NF033679.1	N/A	N/A	DNRLRE domain-containing protein	N/A
structural_annotation	UHGV-1405804_26	PF06995,PF02010,MF_04116,TIGR02126,NF041431,COG3499,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_27	phrog_26795	236.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1405804_27	742740.HMPREF9474_04294	373.0	0	N/A	N/A
structural_annotation	UHGV-1405804_27	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_28	phrog_12764	50.3	0.000000000000032	N/A	unknown function
structural_annotation	UHGV-1405804_28	PF01176,MF_00085,TIGR00523,COG0361	N/A	N/A	N/A	N/A
KOfam	UHGV-1405804_29	K07296	62.7	3.9e-18	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-1405804_29	phrog_6320	76.0	4.1e-22	tail fiber protein	tail
UniRef90	UHGV-1405804_29	UniRef90_A0A174XQW7	469.0	0	Collagen triple helix repeat-containing protein	N/A
Pfam	UHGV-1405804_29	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-1405804_29	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-1405804_30	K24213	80.4	1.8e-23	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1405804_30	phrog_5073	98.9	6e-29	tail fiber protein	tail
UniRef90	UHGV-1405804_30	UniRef90_UPI0012D87B5B	332.0	0	collagen-like protein	N/A
Pfam	UHGV-1405804_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-1405804_31	742740.HMPREF9474_04291	146.0	9.66896e-44	N/A	N/A
structural_annotation	UHGV-1405804_32	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1405804_33	phrog_1863	81.8	1.7e-24	N/A	unknown function
UniRef90	UHGV-1405804_33	UniRef90_UPI001F223E8B	120.0	4.21e-34	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1405804_33	1226322.HMPREF1545_04027	79.7	9.8e-19	N/A	N/A
PHROG	UHGV-1405804_34	phrog_1129	74.7	8.1e-22	holin	lysis
UniRef90	UHGV-1405804_34	UniRef90_A0A3E2U8R6	145.0	8.12753e-44	Enolase	N/A
eggNOG-mapper	UHGV-1405804_34	742740.HMPREF9474_03522	112.0	2.6e-31	N/A	N/A
Pfam	UHGV-1405804_34	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1405804_34	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1405804_35	K00689	49.3	0.000000000000018	E2.4.1.5; dextransucrase [EC:2.4.1.5]	N/A
PHROG	UHGV-1405804_35	phrog_38078	80.2	3.4e-23	N/A	unknown function
UniRef90	UHGV-1405804_35	UniRef90_A0A174XEM4	470.0	0	Cell wall binding repeat-containing protein	N/A
eggNOG-mapper	UHGV-1405804_35	1304866.K413DRAFT_1245	357.0	0	Putative cell wall binding repeat	N/A
Pfam	UHGV-1405804_35	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1405804_35	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-1405804_35	PF19127,PF05382,MF_00727,TIGR04035,NF033742,COG5263	N/A	N/A	N/A	N/A
UniRef90	UHGV-1405804_36	UniRef90_A0A174XS62	101.0	2.22e-27	Toxin-antitoxin system protein	N/A
eggNOG-mapper	UHGV-1405804_36	1235798.C817_02113	71.6	2.68e-16	N/A	N/A
Pfam	UHGV-1405804_36	PF19891	N/A	N/A	N/A	DUF6364
structural_annotation	UHGV-1405804_36	PF19891,TIGR04563,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-1405804_38	UniRef90_A0A174XWS3	209.0	0	Bacterial regulatory proteins, luxR family	N/A
eggNOG-mapper	UHGV-1405804_38	689781.AUJX01000009_gene401	79.7	1.12e-16	N/A	N/A
Pfam	UHGV-1405804_38	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
Pfam	UHGV-1405804_38	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-1405804_38	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1405804_39	1235790.C805_00098	50.8	0.00000324	N/A	N/A
eggNOG-mapper	UHGV-1405804_41	1235793.C809_04605	74.7	1.25e-17	N/A	N/A
UniRef90	UHGV-1405804_42	UniRef90_A0A174XID1	125.0	2.28e-36	Cag pathogenicity island protein	N/A
structural_annotation	UHGV-1405804_42	PF03869,NF008671,COG4710	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1405804_43	411470.RUMGNA_03785	72.0	0.0000000000000364	N/A	N/A
UniRef90	UHGV-1405804_44	UniRef90_A0A413LG66	77.0	6.58e-18	GNAT family acetyltransferase	N/A