UHGV-1407361 (vOTU-125739)

Viral Genome: UHGV-1407361

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1407361
vOTU ID	vOTU-125739
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0202615
Associated BioSample	SAMEA4545376
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.28 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	1
viralVerify prediction	Virus
viralVerify score	28.73
Jumbo phage	No

Genome content
Genome length (bp)	28,442
GC content	61.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	96%
Average CDS length (bps)	605.40
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1407361_4	phrog_38832	70.0	1.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1407361_4	665956.HMPREF1032_00143	55.8	0.000000248	N/A	N/A
KOfam	UHGV-1407361_10	K03497	77.6	2.5e-22	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1407361_10	phrog_27290	341.7	0	N/A	unknown function
UniRef90	UHGV-1407361_10	UniRef90_UPI0003130F10	300.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1407361_10	1007096.BAGW01000033_gene1613	300.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1407361_10	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1407361_10	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1407361_10	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1407361_11	K03496	187.6	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1407361_11	phrog_164	146.4	1.79366e-43	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1407361_11	UniRef90_UPI000318E277	301.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1407361_11	1007096.BAGW01000033_gene1614	292.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-1407361_11	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1407361_11	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1407361_11	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1407361_13	K02314	260.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1407361_13	phrog_19	224.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1407361_13	UniRef90_A0A1Y3RP11	296.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1407361_13	1226322.HMPREF1545_00095	292.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-1407361_13	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1407361_13	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1407361_13	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1407361_13	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_14	phrog_270	100.8	1.8e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1407361_14	UniRef90_UPI00195D2180	144.0	1.55e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1407361_14	742738.HMPREF9460_00851	148.0	1.02001e-40	Helix-turn-helix domain	N/A
Pfam	UHGV-1407361_14	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1407361_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1407361_14	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1407361_15	PF21327	N/A	N/A	N/A	N/A
KOfam	UHGV-1407361_17	K22300	41.8	0.000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1407361_17	phrog_6499	123.2	9.8e-37	transcriptional regulator	transcription regulation
UniRef90	UHGV-1407361_17	UniRef90_G9YL68	140.0	1.06e-39	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1407361_17	742738.HMPREF9460_00847	140.0	1.23999e-40	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1407361_17	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1407361_17	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1407361_17	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1407361_18	K22300	58.6	1.5e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1407361_18	phrog_3	40.2	0.00000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-1407361_18	UniRef90_A0A3D0EBY8	52.0	0.000000166	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1407361_18	1408415.JHXL01000001_gene419	49.3	0.00000514	sequence-specific DNA binding	N/A
Pfam	UHGV-1407361_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1407361_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1407361_18	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1407361_19	UniRef90_N1ZLF0	86.3	1.16e-20	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1407361_19	397291.C804_05807	84.0	1.59e-20	sequence-specific DNA binding	N/A
COG	UHGV-1407361_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1407361_19	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1407361_20	PF13601,TIGR04176	N/A	N/A	N/A	N/A
UniRef90	UHGV-1407361_22	UniRef90_A0A1Y3ZTC9	113.0	1.63e-30	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1407361_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1407361_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1407361_22	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1407361_24	1262449.CP6013_2082	167.0	0	N/A	N/A
structural_annotation	UHGV-1407361_24	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-1407361_25	K14059	154.4	1.4013e-45	int; integrase	N/A
PHROG	UHGV-1407361_25	phrog_1	152.2	4.2039e-45	integrase	integration and excision
UniRef90	UHGV-1407361_25	UniRef90_UPI001EDEB0AD	275.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1407361_25	1226322.HMPREF1545_00144	248.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1407361_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1407361_25	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1407361_25	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_26	phrog_9589	81.4	3.3e-29	endolysin	lysis
UniRef90	UHGV-1407361_26	UniRef90_A0A173RCK3	169.0	0	Zinc D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-1407361_26	476272.RUMHYD_02876	172.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-1407361_26	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1407361_26	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1407361_26	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1407361_26	PF01471,PF06940,TIGR02594,NF038080,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_27	phrog_881	90.3	9.8e-27	holin	lysis
UniRef90	UHGV-1407361_27	UniRef90_UPI00189D3A4F	88.2	1.38e-21	phage holin	N/A
eggNOG-mapper	UHGV-1407361_27	742740.HMPREF9474_02251	82.4	4.96e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-1407361_27	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1407361_27	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_28	phrog_4105	99.1	2.7e-29	N/A	unknown function
UniRef90	UHGV-1407361_28	UniRef90_A0A8D9UHA9	140.0	3.20001e-41	Holin protein	N/A
eggNOG-mapper	UHGV-1407361_28	742733.HMPREF9469_05011	117.0	5.98e-33	N/A	N/A
structural_annotation	UHGV-1407361_29	PF10651,TIGR02059	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_30	phrog_1067	279.3	0	minor head protein	head and packaging
UniRef90	UHGV-1407361_30	UniRef90_A0A316NPB5	391.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1407361_30	1123263.AUKY01000068_gene489	301.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1407361_30	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1407361_30	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1407361_30	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1407361_30	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_31	phrog_33	65.7	1.1e-18	distal tail protein Dit	tail
UniRef90	UHGV-1407361_31	UniRef90_A0A173Z1X4	181.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1407361_31	536233.CLO_0897	96.7	1.38e-21	tail component	N/A
COG	UHGV-1407361_31	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1407361_31	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_32	phrog_3981	255.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1407361_32	UniRef90_A0A7X8M4B4	300.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-1407361_32	1216932.CM240_0625	327.0	0	tape measure	N/A
COG	UHGV-1407361_32	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1407361_32	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_35	phrog_88	96.4	3e-28	major tail protein	tail
UniRef90	UHGV-1407361_35	UniRef90_A0A1C6CIL7	135.0	1.38e-35	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1407361_35	33035.JPJF01000039_gene278	71.6	0.0000000000011	N/A	N/A
NCBIFam	UHGV-1407361_35	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1407361_35	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_36	phrog_5	44.8	0.0000000000027	tail completion or Neck1 protein	connector
UniRef90	UHGV-1407361_36	UniRef90_A0A1C6FG30	129.0	5.49e-35	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1407361_36	908340.HMPREF9406_2573	126.0	6.24e-35	N/A	N/A
structural_annotation	UHGV-1407361_36	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1407361_37	999413.HMPREF1094_02005	80.1	6.36e-18	N/A	N/A
structural_annotation	UHGV-1407361_37	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_38	phrog_19734	116.4	1.6e-34	N/A	unknown function
UniRef90	UHGV-1407361_38	UniRef90_A0A6I7GNS7	128.0	1.02e-35	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1407361_38	349161.Dred_2602	90.1	1.28e-21	N/A	N/A
structural_annotation	UHGV-1407361_38	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_39	phrog_749	67.1	2.3e-19	N/A	unknown function
UniRef90	UHGV-1407361_39	UniRef90_UPI001C0FB8A8	55.8	0.0000000436	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1407361_39	349161.Dred_2603	78.6	1.1e-17	N/A	N/A
PHROG	UHGV-1407361_40	phrog_10	132.3	5.3e-39	major head protein	head and packaging
UniRef90	UHGV-1407361_40	UniRef90_G9YSC0	682.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1407361_40	1235792.C808_00086	414.0	0	Phage capsid family	N/A
Pfam	UHGV-1407361_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1407361_40	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1407361_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1407361_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1407361_40	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1407361_41	K01358	133.5	2e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1407361_41	phrog_94	249.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1407361_41	UniRef90_A0A1Y4BT12	353.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1407361_41	349161.Dred_2605	303.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1407361_41	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1407361_41	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1407361_41	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_42	phrog_12	114.9	1.3e-34	portal protein	head and packaging
UniRef90	UHGV-1407361_42	UniRef90_UPI0018755FA4	507.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1407361_42	610130.Closa_0742	294.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1407361_42	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1407361_42	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1407361_42	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1407361_42	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_43	phrog_9	245.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1407361_43	UniRef90_UPI0018737C02	905.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1407361_43	1235792.C808_00083	598.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1407361_43	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1407361_43	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1407361_43	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1407361_43	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1407361_44	phrog_5110	58.4	9.7e-17	terminase small subunit	head and packaging
UniRef90	UHGV-1407361_44	UniRef90_UPI00195E8788	126.0	7.59e-35	P27 family phage terminase small subunit	N/A