UHGV-1407873 (vOTU-025010)

Viral Genome: UHGV-1407873

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1407873
vOTU ID	vOTU-025010
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0252957
Associated BioSample	SAMEA3665200
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.82 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.45
Jumbo phage	No

Genome content
Genome length (bp)	37,238
GC content	43.01%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	90%
Average CDS length (bps)	521.16
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1407873_1	phrog_581	95.3	4.00001e-41	minor head protein	head and packaging
UniRef90	UHGV-1407873_1	UniRef90_UPI00129DFE49	499.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-1407873_1	1298920.KI911353_gene4854	263.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1407873_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1407873_1	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_2	phrog_533	302.6	0	portal protein	head and packaging
UniRef90	UHGV-1407873_2	UniRef90_A0A3E2WNW5	978.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1407873_2	742740.HMPREF9474_03501	741.0	0	N/A	N/A
structural_annotation	UHGV-1407873_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1407873_3	K06909	75.7	7.1e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1407873_3	phrog_10250	57.6	1.8e-16	N/A	unknown function
UniRef90	UHGV-1407873_3	UniRef90_UPI001D06E172	771.0	0	terminase	N/A
eggNOG-mapper	UHGV-1407873_3	742740.HMPREF9474_03500	747.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1407873_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1407873_3	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_4	phrog_59	127.4	5.8e-38	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1407873_4	UniRef90_A0A6L9EPW1	145.0	1.97e-40	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1407873_4	749413.E5DV63_9VIRU	94.0	9.95e-21	HNH endonuclease	N/A
PADLOC	UHGV-1407873_4	HEase_00016	77.0	1.4e-22	homing endonuclease	RM
Pfam	UHGV-1407873_4	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1407873_4	PF13392	N/A	N/A	HNH endonuclease	HNH_3
KOfam	UHGV-1407873_5	K07474	162.1	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1407873_5	phrog_51	159.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-1407873_5	UniRef90_A0A3E2WMP5	320.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1407873_5	742740.HMPREF9474_03499	271.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-1407873_5	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1407873_5	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1407873_5	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_7	phrog_36	64.2	2.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1407873_7	UniRef90_A0A174EB71	113.0	1.75e-29	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	N/A
eggNOG-mapper	UHGV-1407873_7	665950.HMPREF1025_02539	112.0	7.88e-30	sigma factor activity	N/A
Pfam	UHGV-1407873_7	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-1407873_7	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1407873_7	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-1407873_10	UniRef90_A0A3E2WE90	753.0	0	N/A	N/A
eggNOG-mapper	UHGV-1407873_10	1232453.BAIF02000086_gene329	682.0	0	N/A	N/A
Pfam	UHGV-1407873_10	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-1407873_10	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
KOfam	UHGV-1407873_11	K00558	142.9	1.4013e-43	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1407873_11	phrog_363	215.9	0	DNA methyltransferase	other
UniRef90	UHGV-1407873_11	UniRef90_UPI00129DFAF3	540.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1407873_11	903814.ELI_3130	375.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1407873_11	MTase_II_00058	112.0	9.2e-33	Type II methyltransferase	RM
Pfam	UHGV-1407873_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1407873_11	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1407873_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1407873_11	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1407873_13	1232453.BAIF02000134_gene1601	269.0	0	N/A	N/A
eggNOG-mapper	UHGV-1407873_14	411902.CLOBOL_05678	122.0	5.73e-36	N/A	N/A
eggNOG-mapper	UHGV-1407873_18	1232453.BAIF02000057_gene1147	94.7	2.55e-24	N/A	N/A
PHROG	UHGV-1407873_22	phrog_25488	142.6	8.09951e-43	N/A	unknown function
structural_annotation	UHGV-1407873_22	PF12844,PF01316,MF_00535,TIGR00270,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_23	phrog_16304	187.5	0	N/A	unknown function
UniRef90	UHGV-1407873_23	UniRef90_UPI00129E2E75	439.0	0	N/A	N/A
eggNOG-mapper	UHGV-1407873_23	33035.JPJF01000071_gene4467	199.0	0	N/A	N/A
Pfam	UHGV-1407873_23	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1407873_23	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_25	phrog_7566	44.8	0.0000000000019	N/A	unknown function
UniRef90	UHGV-1407873_25	UniRef90_A0A3R6GE59	147.0	2.24208e-44	Phosphoenolpyruvate carboxykinase	N/A
PHROG	UHGV-1407873_27	phrog_14970	273.3	0	N/A	unknown function
UniRef90	UHGV-1407873_27	UniRef90_A0A3P6JH63	228.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1407873_27	411470.RUMGNA_02193	273.0	0	double-strand break repair protein	N/A
COG	UHGV-1407873_27	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1407873_27	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1407873_28	K03698	52.3	0.0000000000000086	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-1407873_28	phrog_5889	97.6	6.2e-29	N/A	unknown function
UniRef90	UHGV-1407873_28	UniRef90_A0A174J687	414.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-1407873_28	411468.CLOSCI_00316	261.0	0	Metal dependent phosphohydrolases with conserved 'HD' motif.	N/A
Pfam	UHGV-1407873_28	PF01966	N/A	N/A	HD domain	HD
COG	UHGV-1407873_28	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-1407873_28	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_31	phrog_36464	51.3	0.000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-1407873_31	411461.DORFOR_01136	54.7	0.0000000107	N/A	N/A
PHROG	UHGV-1407873_33	phrog_8	46.1	0.0000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1407873_33	UniRef90_UPI00129E4B07	108.0	9.67e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1407873_33	411460.RUMTOR_02057	95.1	2.45e-25	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1407873_33	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
structural_annotation	UHGV-1407873_33	PF01381,TIGR02607,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1407873_34	K07729	40.1	0.000000000073	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1407873_34	phrog_8	59.5	8.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1407873_34	UniRef90_A0A3R6A4D1	193.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1407873_34	476272.RUMHYD_02826	164.0	0	TRANSCRIPTIONal	N/A
Pfam	UHGV-1407873_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1407873_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1407873_34	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_35	phrog_20886	86.0	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-1407873_35	476272.RUMHYD_02825	66.2	0.000000000000904	N/A	N/A
structural_annotation	UHGV-1407873_35	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1407873_37	K01356	51.0	0.000000000000032	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1407873_37	phrog_4	51.9	0.000000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-1407873_37	UniRef90_UPI001563822F	236.0	0	S24 family peptidase	N/A
eggNOG-mapper	UHGV-1407873_37	1235792.C808_02455	65.5	0.0000000000355	Peptidase S24-like	N/A
Pfam	UHGV-1407873_37	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1407873_37	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
eggNOG-mapper	UHGV-1407873_38	411470.RUMGNA_03228	93.6	4.71e-22	N/A	N/A
KOfam	UHGV-1407873_39	K14059	165.4	0	int; integrase	N/A
PHROG	UHGV-1407873_39	phrog_1	160.1	0	integrase	integration and excision
UniRef90	UHGV-1407873_39	UniRef90_A0A174MWI6	692.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1407873_39	1232453.BAIF02000027_gene4194	480.0	0	Phage integrase family	N/A
Pfam	UHGV-1407873_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1407873_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1407873_39	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_40	phrog_582	43.3	0.0000000000072	Arc-like repressor	transcription regulation
UniRef90	UHGV-1407873_40	UniRef90_UPI00129DE9D4	116.0	3.69e-33	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-1407873_40	1160721.RBI_I00482	50.1	0.00000022	N/A	N/A
Pfam	UHGV-1407873_40	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
NCBIFam	UHGV-1407873_40	NF041551.1	N/A	N/A	YlcI/YnfO family protein	N/A
structural_annotation	UHGV-1407873_40	PF03869,NF010256	N/A	N/A	N/A	N/A
KOfam	UHGV-1407873_42	K01447	57.3	3.5e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1407873_42	phrog_833	154.9	0	endolysin	lysis
UniRef90	UHGV-1407873_42	UniRef90_UPI00051AF3AE	342.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1407873_42	411470.RUMGNA_03787	320.0	0	COG NOG33632 non supervised orthologous group	N/A
Pfam	UHGV-1407873_42	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1407873_42	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
structural_annotation	UHGV-1407873_42	PF01510,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_44	phrog_10091	105.3	4e-31	holin	lysis
UniRef90	UHGV-1407873_44	UniRef90_A0A3E2WES5	174.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-1407873_44	97139.C824_05950	124.0	3.86e-36	Bacteriophage holin	N/A
Pfam	UHGV-1407873_44	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1407873_44	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1407873_44	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1407873_44	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_45	phrog_937	46.0	0.000000000001	hemolysin	other
eggNOG-mapper	UHGV-1407873_46	1232453.BAIF02000059_gene1614	481.0	0	N/A	N/A
PHROG	UHGV-1407873_48	phrog_6616	148.6	3.92364e-44	tail protein	tail
UniRef90	UHGV-1407873_48	UniRef90_UPI001C10B551	481.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1407873_48	1232453.BAIF02000058_gene1641	1102.0	0	Phage minor structural protein	N/A
COG	UHGV-1407873_48	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1407873_48	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_49	phrog_1401	75.2	8.1e-22	N/A	unknown function
UniRef90	UHGV-1407873_49	UniRef90_A0A7C6P910	87.4	1.09e-19	N/A	N/A
eggNOG-mapper	UHGV-1407873_49	1232453.BAIF02000058_gene1640	197.0	0	N/A	N/A
structural_annotation	UHGV-1407873_49	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_50	phrog_2566	86.5	1.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-1407873_50	1232453.BAIF02000058_gene1639	125.0	6.66e-37	N/A	N/A
PHROG	UHGV-1407873_51	phrog_1194	66.6	3.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1407873_51	33035.JPJF01000093_gene2242	154.0	0	N/A	N/A
structural_annotation	UHGV-1407873_51	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_52	phrog_1535	529.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1407873_52	UniRef90_A0A0A7FVV5	375.0	0	Putative membrane protein	N/A
eggNOG-mapper	UHGV-1407873_52	1415775.U729_2614	375.0	0	phage tail tape measure protein	N/A
COG	UHGV-1407873_52	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_53	phrog_8355	100.6	5e-30	N/A	unknown function
UniRef90	UHGV-1407873_53	UniRef90_UPI001B38A767	141.0	2.64005e-41	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1407873_53	1280692.AUJL01000027_gene2152	130.0	1.88e-37	N/A	N/A
Pfam	UHGV-1407873_53	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1407873_53	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_54	phrog_8300	97.2	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-1407873_54	1262449.CP6013_3206	102.0	7.22e-27	N/A	N/A
structural_annotation	UHGV-1407873_54	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_55	phrog_820	125.0	4e-37	major tail protein	tail
eggNOG-mapper	UHGV-1407873_55	1280692.AUJL01000027_gene2154	251.0	0	domain, Protein	N/A
COG	UHGV-1407873_55	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1407873_55	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_56	phrog_2595	95.0	6.3e-28	head-tail connector protein	connector
UniRef90	UHGV-1407873_56	UniRef90_UPI0011CC909E	223.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1407873_56	1294142.CINTURNW_1034	168.0	0	N/A	N/A
Pfam	UHGV-1407873_56	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1407873_56	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_57	phrog_556	60.7	2.3e-17	minor head protein	head and packaging
UniRef90	UHGV-1407873_57	UniRef90_UPI001D4D3E00	152.0	2.8026e-45	minor capsid protein	N/A
eggNOG-mapper	UHGV-1407873_57	1294142.CINTURNW_1033	159.0	0	N/A	N/A
PHROG	UHGV-1407873_58	phrog_8710	148.4	1.54143e-44	N/A	unknown function
eggNOG-mapper	UHGV-1407873_58	1304866.K413DRAFT_0782	147.0	2.10195e-44	N/A	N/A
structural_annotation	UHGV-1407873_58	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_59	phrog_541	87.8	1.1e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-1407873_59	33035.JPJF01000093_gene2250	221.0	0	N/A	N/A
PHROG	UHGV-1407873_60	phrog_1378	68.7	7.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1407873_60	742740.HMPREF9474_03506	102.0	2.32e-27	N/A	N/A
PHROG	UHGV-1407873_61	phrog_422	349.4	0	major head protein	head and packaging
UniRef90	UHGV-1407873_61	UniRef90_E7GRG0	569.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1407873_61	742740.HMPREF9474_03505	569.0	0	N/A	N/A
structural_annotation	UHGV-1407873_61	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1407873_62	phrog_2303	149.0	3.22299e-44	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1407873_62	1304866.K413DRAFT_0806	216.0	0	N/A	N/A
PHROG	UHGV-1407873_63	phrog_5106	42.2	0.000000000017	N/A	unknown function
PHROG	UHGV-1407873_64	phrog_581	191.1	0	minor head protein	head and packaging
UniRef90	UHGV-1407873_64	UniRef90_UPI0018AA82F0	268.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1407873_64	86416.Clopa_0572	227.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1407873_64	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1407873_64	COG2369	N/A	N/A	N/A	N/A