UHGV-1407989 (vOTU-137127)

Viral Genome: UHGV-1407989

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1407989
vOTU ID	vOTU-137127
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0203702
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.51 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9753
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.76
Jumbo phage	No

Genome content
Genome length (bp)	28,630
GC content	54.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	90%
Average CDS length (bps)	534.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.51)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1407989_5	UniRef90_A0A357JC47	49.7	0.000000864	RHH_5 domain-containing protein	N/A
Pfam	UHGV-1407989_5	PF05534	N/A	N/A	HicB family	HicB
structural_annotation	UHGV-1407989_5	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-1407989_7	phrog_15863	156.7	0	N/A	unknown function
UniRef90	UHGV-1407989_7	UniRef90_A0A1Y3R3M0	202.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-1407989_7	693746.OBV_01780	189.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1407989_7	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-1407989_8	PF17917	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1407989_11	1519439.JPJG01000011_gene53	177.0	2.76e-41	N/A	N/A
eggNOG-mapper	UHGV-1407989_13	693746.OBV_01730	64.7	0.000000000023	N/A	N/A
structural_annotation	UHGV-1407989_13	PF11650	N/A	N/A	N/A	N/A
UniRef90	UHGV-1407989_14	UniRef90_A0A4D7ASB8	309.0	0	N/A	N/A
eggNOG-mapper	UHGV-1407989_14	693746.OBV_01680	315.0	0	N/A	N/A
structural_annotation	UHGV-1407989_14	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
UniRef90	UHGV-1407989_15	UniRef90_UPI001C01A488	140.0	7.04e-40	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1407989_15	561177.ANHYDRO_01396	83.6	1.25e-18	Endodeoxyribonuclease RusA	N/A
COG	UHGV-1407989_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1407989_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1407989_16	K03111	138.0	9.99995e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1407989_16	phrog_44	148.5	3.50325e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1407989_16	UniRef90_A0A3D2HZK1	178.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1407989_16	1226322.HMPREF1545_04080	167.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1407989_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1407989_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1407989_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1407989_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1407989_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1407989_18	phrog_4019	136.7	5.29999e-41	N/A	unknown function
UniRef90	UHGV-1407989_18	UniRef90_F9PY75	116.0	1.48e-31	Conserved domain protein	N/A
Pfam	UHGV-1407989_21	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-1407989_22	phrog_924	48.9	0.00000000000014	N/A	unknown function
UniRef90	UHGV-1407989_22	UniRef90_UPI001873F304	55.8	0.0000000251	N/A	N/A
Pfam	UHGV-1407989_22	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1407989_24	phrog_3136	135.9	9.99995e-41	N/A	unknown function
UniRef90	UHGV-1407989_24	UniRef90_A0A329TS47	132.0	2.5e-35	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1407989_24	693746.OBV_25380	53.5	0.00000401	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1407989_24	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1407989_24	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1407989_25	phrog_599	46.8	0.00000000000059	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1407989_25	UniRef90_R6QWY1	104.0	1.87e-27	28	N/A
PHROG	UHGV-1407989_27	phrog_9298	41.5	0.00000000002	radical SAM domain protein	other
eggNOG-mapper	UHGV-1407989_27	742817.HMPREF9449_01796	134.0	7.56e-37	radical SAM domain protein	N/A
COG	UHGV-1407989_27	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
eggNOG-mapper	UHGV-1407989_28	742738.HMPREF9460_03770	98.6	1.21e-23	radical SAM domain protein	N/A
COG	UHGV-1407989_28	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
eggNOG-mapper	UHGV-1407989_29	748224.HMPREF9436_03069	69.7	0.0000000000000335	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1407989_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1407989_31	phrog_15768	48.9	0.00000000000012	N/A	unknown function
Pfam	UHGV-1407989_31	PF19808	N/A	N/A	N/A	DUF6291
KOfam	UHGV-1407989_32	K06167	49.2	0.000000000000074	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1407989_32	phrog_392	101.4	1.3e-29	metal-dependent hydrolase	other
UniRef90	UHGV-1407989_32	UniRef90_A0A350XZ09	164.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-1407989_32	665956.HMPREF1032_03101	157.0	4.2039e-45	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1407989_32	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1407989_32	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1407989_32	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1407989_33	phrog_3657	337.7	0	N/A	unknown function
UniRef90	UHGV-1407989_33	UniRef90_UPI001DC4E782	274.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1407989_33	411461.DORFOR_00020	285.0	0	N/A	N/A
PHROG	UHGV-1407989_34	phrog_674	106.0	3e-31	N/A	unknown function
UniRef90	UHGV-1407989_34	UniRef90_A0A7X9JQ21	120.0	8.57e-29	N/A	N/A
eggNOG-mapper	UHGV-1407989_34	888059.HMPREF9071_2097	97.8	7.5e-21	N/A	N/A
Pfam	UHGV-1407989_34	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1407989_34	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1407989_35	K07699	49.0	0.000000000000078	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
eggNOG-mapper	UHGV-1407989_35	718252.FP2_08180	55.5	0.000000196	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	N/A
Pfam	UHGV-1407989_35	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-1407989_35	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
structural_annotation	UHGV-1407989_35	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-1407989_41	K22300	69.3	8.3e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1407989_41	phrog_8	71.3	2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1407989_41	UniRef90_A0A7X9GQ47	64.7	0.0000000000747	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1407989_41	768486.EHR_02790	64.7	0.000000000128	Peptidase S24-like	N/A
Pfam	UHGV-1407989_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1407989_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1407989_44	K18830	56.5	7e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1407989_44	phrog_8	48.4	0.00000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-1407989_44	UniRef90_A0A6N7WRP8	115.0	6.66e-31	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1407989_44	903814.ELI_1263	106.0	5.33e-28	Helix-turn-helix domain	N/A
Pfam	UHGV-1407989_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1407989_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1407989_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1407989_45	K18830	60.8	3.4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1407989_45	phrog_8	48.8	0.00000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-1407989_45	UniRef90_E2ZIF0	111.0	4.8e-29	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1407989_45	748224.HMPREF9436_01444	111.0	8.05e-30	N/A	N/A
Pfam	UHGV-1407989_45	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1407989_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1407989_47	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1407989_48	888055.HMPREF9015_01890	53.9	0.0000015	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1407989_48	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-1407989_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1407989_48	PF10571	N/A	N/A	N/A	N/A