UHGV-1408372 (vOTU-125150)

Viral Genome: UHGV-1408372

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1408372
vOTU ID	vOTU-125150
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0187840
Associated BioSample	SAMN04126291
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.58 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9773
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.52
Jumbo phage	No

Genome content
Genome length (bp)	25,898
GC content	32.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	29
CDS density	93%
Average CDS length (bps)	826.66
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1408372_1	K07273	128.9	4.8e-38	acm; lysozyme	N/A
PHROG	UHGV-1408372_1	phrog_291	91.3	1.3e-26	endolysin	lysis
UniRef90	UHGV-1408372_1	UniRef90_A0A1C5QWE6	113.0	5.43e-28	Lysozyme M1	N/A
eggNOG-mapper	UHGV-1408372_1	596315.HMPREF0634_0299	108.0	1.42e-25	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1408372_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1408372_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1408372_1	PF01183,MF_00681,TIGR00433,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1408372_5	phrog_9574	59.3	6.9e-21	tail protein	tail
Pfam	UHGV-1408372_5	PF12789	N/A	N/A	Phage tail repeat like	PTR
structural_annotation	UHGV-1408372_5	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1408372_9	phrog_1330	99.1	1.6e-37	tail protein	tail
eggNOG-mapper	UHGV-1408372_9	1408438.JADD01000021_gene420	85.9	0.0000000000000305	Phage minor structural protein	N/A
COG	UHGV-1408372_9	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1408372_10	phrog_33	69.6	7e-20	distal tail protein Dit	tail
UniRef90	UHGV-1408372_10	UniRef90_A8U7X9	176.0	0	Prophage LambdaSa04, tail protein, putative	N/A
eggNOG-mapper	UHGV-1408372_10	592010.GCWU000182_001495	122.0	3.86e-31	N/A	N/A
structural_annotation	UHGV-1408372_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1408372_11	K20283	45.2	0.00000000000019	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1408372_11	phrog_1293	572.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1408372_11	UniRef90_A0A233W5U9	1867.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1408372_11	592010.GCWU000182_001494	465.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1408372_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1408372_11	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1408372_11	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1408372_11	PF10145,PF05384,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1408372_12	phrog_16464	87.7	1.4e-25	N/A	unknown function
PHROG	UHGV-1408372_13	phrog_11502	45.7	0.00000000000083	tail protein	tail
UniRef90	UHGV-1408372_13	UniRef90_UPI00101D6026	178.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1408372_13	1408438.JADD01000021_gene415	268.0	0	N/A	N/A
structural_annotation	UHGV-1408372_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1408372_14	UniRef90_W1Q5X5	142.0	6.43995e-41	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1408372_14	592010.GCWU000182_001490	142.0	1.07998e-41	N/A	N/A
structural_annotation	UHGV-1408372_14	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1408372_15	phrog_15828	54.2	0.0000000000000023	N/A	unknown function
structural_annotation	UHGV-1408372_15	PF06141	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1408372_16	1408438.JADD01000021_gene412	92.0	1.33e-22	N/A	N/A
structural_annotation	UHGV-1408372_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1408372_17	phrog_749	78.2	8.3e-23	N/A	unknown function
UniRef90	UHGV-1408372_17	UniRef90_UPI0005564806	63.5	0.000000000037	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1408372_17	592010.GCWU000182_001487	65.5	0.000000000000984	N/A	N/A
PHROG	UHGV-1408372_18	phrog_10	93.4	2.8e-27	major head protein	head and packaging
UniRef90	UHGV-1408372_18	UniRef90_A0A233W5Q9	733.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1408372_18	565653.EGBG_01970	462.0	0	Phage capsid family	N/A
Pfam	UHGV-1408372_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1408372_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1408372_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1408372_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1408372_19	K01358	142.7	3.50044e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1408372_19	phrog_94	210.9	0	head maturation protease	head and packaging
UniRef90	UHGV-1408372_19	UniRef90_A0A233W5S0	436.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1408372_19	592010.GCWU000182_001485	191.0	0	Clp protease	N/A
Pfam	UHGV-1408372_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1408372_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1408372_19	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1408372_20	phrog_12	92.0	5.3e-27	portal protein	head and packaging
UniRef90	UHGV-1408372_20	UniRef90_W1Q2L9	315.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1408372_20	592010.GCWU000182_001484	315.0	0	Phage portal protein	N/A
Pfam	UHGV-1408372_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1408372_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1408372_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1408372_21	phrog_9	313.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1408372_21	UniRef90_UPI0004806741	668.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1408372_21	1408438.JADD01000021_gene407	668.0	0	Phage Terminase	N/A
Pfam	UHGV-1408372_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1408372_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1408372_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1408372_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1408372_22	phrog_2343	96.8	1e-28	terminase small subunit	head and packaging
UniRef90	UHGV-1408372_22	UniRef90_UPI0004ACBBBB	87.4	2.23e-20	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1408372_22	1408438.JADD01000021_gene406	87.4	5.04e-21	N/A	N/A
Pfam	UHGV-1408372_22	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1408372_22	PF05119,TIGR01558	N/A	N/A	N/A	N/A
UniRef90	UHGV-1408372_23	UniRef90_A0A1H2YK04	216.0	0	Adenine-specific methyltransferase EcoRI	N/A
eggNOG-mapper	UHGV-1408372_23	641143.HMPREF9331_02194	216.0	0	N/A	N/A
PADLOC	UHGV-1408372_23	MTase_II_00083	196.3	0	Type II methyltransferase	RM
Pfam	UHGV-1408372_23	PF13651	N/A	N/A	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
structural_annotation	UHGV-1408372_23	PF13651,MF_00607,NF012222,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-1408372_24	K07451	47.0	0.00000000000047	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1408372_24	phrog_119	69.5	4.5e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1408372_24	UniRef90_A0A233W5N5	194.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1408372_24	1408438.JADD01000021_gene405	100.0	4.62e-26	HNH nucleases	N/A
Pfam	UHGV-1408372_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1408372_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-1408372_25	525254.HMPREF0072_1270	203.0	0	N/A	N/A
AcrCatalog	UHGV-1408372_25	cluster_40747	182.0	0	NA	N/A
PHROG	UHGV-1408372_26	phrog_2277	50.2	0.000000000000034	N/A	unknown function