UHGV-1408814 (vOTU-081362)

Viral Genome: UHGV-1408814

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1408814
vOTU ID	vOTU-081362
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0202457
Associated BioSample	SAMEA1906534
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.05 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9617
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.24
Jumbo phage	No

Genome content
Genome length (bp)	28,414
GC content	60.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	92%
Average CDS length (bps)	532.71
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1408814_1	1235794.C811_01388	54.3	0.000000177	Belongs to the 'phage' integrase family	N/A
COG	UHGV-1408814_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-1408814_3	phrog_13141	151.9	4.2039e-45	N/A	unknown function
UniRef90	UHGV-1408814_3	UniRef90_A0A087E4D0	129.0	1.2e-32	Phage-related putative tail protein	N/A
eggNOG-mapper	UHGV-1408814_3	1256908.HMPREF0373_00465	91.7	4.9e-19	N/A	N/A
structural_annotation	UHGV-1408814_3	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_4	phrog_538	136.7	2.4e-41	minor tail protein	tail
UniRef90	UHGV-1408814_4	UniRef90_A0A087E4D2	224.0	0	Phage head fiber protein	N/A
eggNOG-mapper	UHGV-1408814_4	1111121.HMPREF1247_0853	200.0	0	N/A	N/A
structural_annotation	UHGV-1408814_4	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-1408814_5	UniRef90_UPI001F242491	120.0	5.21e-29	phage tail family protein	N/A
eggNOG-mapper	UHGV-1408814_5	658655.HMPREF0988_02551	114.0	2.21e-27	N/A	N/A
structural_annotation	UHGV-1408814_5	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_6	phrog_58	228.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1408814_6	UniRef90_A0A4U4E5W0	162.0	5.94e-39	Phage tail tape measure protein (Fragment)	N/A
eggNOG-mapper	UHGV-1408814_6	401473.BDP_1472	206.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1408814_6	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1408814_6	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1408814_6	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1408814_6	PF20155,TIGR02675,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_7	phrog_706	114.7	7.8e-34	N/A	unknown function
UniRef90	UHGV-1408814_7	UniRef90_D6E8T4	116.0	6.85e-29	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1408814_7	411460.RUMTOR_02091	69.7	0.00000000000538	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-1408814_7	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1408814_7	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408814_8	PF10666	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408814_9	PF10666	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408814_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408814_11	PF20765,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_12	phrog_556	66.4	3.9e-19	minor head protein	head and packaging
UniRef90	UHGV-1408814_12	UniRef90_UPI0010F90370	52.4	0.00000267	minor capsid protein	N/A
Pfam	UHGV-1408814_12	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1408814_12	PF11114,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408814_13	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_15	phrog_544	106.1	3.5e-31	major head protein	head and packaging
UniRef90	UHGV-1408814_15	UniRef90_A0A516KPU9	159.0	1.9478e-43	Major head protein	N/A
eggNOG-mapper	UHGV-1408814_15	936154.STP_1268	149.0	1.52999e-40	N/A	N/A
structural_annotation	UHGV-1408814_15	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_16	phrog_194	63.0	5e-18	head scaffolding protein	head and packaging
Pfam	UHGV-1408814_16	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1408814_16	PF06810,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-1408814_18	K07741	128.6	1.2e-37	antB; anti-repressor protein	N/A
PHROG	UHGV-1408814_18	phrog_130	256.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1408814_18	UniRef90_A0A4S2EVW2	304.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1408814_18	883077.HMPREF9241_01671	294.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1408814_18	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1408814_18	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1408814_18	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1408814_18	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_20	phrog_3675	67.6	1.3e-19	N/A	unknown function
UniRef90	UHGV-1408814_20	UniRef90_A0A3N0I0X7	80.9	1.58e-17	Dihydrolipoyl dehydrogenase	N/A
eggNOG-mapper	UHGV-1408814_20	585501.HMPREF6123_0838	64.3	0.00000000000763	YjcQ protein	N/A
Pfam	UHGV-1408814_20	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1408814_20	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_22	phrog_581	153.2	1.4013e-45	minor head protein	head and packaging
UniRef90	UHGV-1408814_22	UniRef90_UPI0003ADCFD0	164.0	7.47e-40	phage capsid protein	N/A
eggNOG-mapper	UHGV-1408814_22	1111121.HMPREF1247_0842	164.0	1.25e-40	Phage minor capsid protein 2	N/A
Pfam	UHGV-1408814_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1408814_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408814_22	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_23	phrog_533	155.1	0	portal protein	head and packaging
UniRef90	UHGV-1408814_23	UniRef90_UPI000DF7AA34	147.0	1.19e-37	phage portal protein	N/A
eggNOG-mapper	UHGV-1408814_23	471855.Shel_03460	145.0	3.77e-37	phage minor capsid protein	N/A
PHROG	UHGV-1408814_24	phrog_533	49.8	0.00000000000003	portal protein	head and packaging
KOfam	UHGV-1408814_25	K06909	253.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1408814_25	phrog_5653	105.4	1.5e-31	terminase large subunit	head and packaging
UniRef90	UHGV-1408814_25	UniRef90_A0A1Y4G845	543.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1408814_25	1273103.NM10_06806	268.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1408814_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1408814_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-1408814_32	phrog_21525	46.6	0.00000000000057	N/A	unknown function
PHROG	UHGV-1408814_33	phrog_6504	47.3	0.00000000000031	N/A	unknown function
eggNOG-mapper	UHGV-1408814_34	521003.COLINT_02330	56.6	0.000000528	N/A	N/A
structural_annotation	UHGV-1408814_34	PF16090	N/A	N/A	N/A	N/A
KOfam	UHGV-1408814_35	K01520	83.4	3e-24	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1408814_35	phrog_135	86.8	2.4e-25	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1408814_35	UniRef90_R6HJ77	202.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1408814_35	1450694.BTS2_3268	125.0	9.38e-35	Deoxyuridine 5'-triphosphate	N/A
Pfam	UHGV-1408814_35	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-1408814_35	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
PHROG	UHGV-1408814_37	phrog_15768	42.0	0.000000000017	N/A	unknown function
eggNOG-mapper	UHGV-1408814_37	521003.COLINT_02319	57.8	0.00000000384	HNH endonuclease	N/A
Pfam	UHGV-1408814_37	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1408814_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1408814_38	K03111	129.7	3.4e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1408814_38	phrog_44	129.3	2.7e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1408814_38	UniRef90_R7ANG4	211.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1408814_38	742818.HMPREF9451_01652	206.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1408814_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1408814_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1408814_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1408814_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1408814_38	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1408814_40	phrog_2760	168.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1408814_40	UniRef90_A0A7K3L0J7	204.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1408814_40	1235794.C811_01355	204.0	0	RecT family	N/A
Pfam	UHGV-1408814_40	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1408814_40	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1408814_40	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
eggNOG-mapper	UHGV-1408814_42	479437.Elen_2599	71.6	0.000000000000425	N/A	N/A
KOfam	UHGV-1408814_43	K01160	61.9	1.5e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1408814_43	phrog_140	84.1	1.8e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1408814_43	UniRef90_R7BNY6	154.0	1.4013e-45	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1408814_43	479437.Elen_2598	107.0	3.31e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1408814_43	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1408814_43	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1408814_43	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-1408814_45	UniRef90_A0A3N0ATF1	48.5	0.00000698	HTH_17 domain-containing protein	N/A
Pfam	UHGV-1408814_45	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1408814_45	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
KOfam	UHGV-1408814_47	K22300	57.1	4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1408814_47	phrog_4	73.2	4.6e-21	transcriptional repressor	transcription regulation
UniRef90	UHGV-1408814_47	UniRef90_A0A1Q6E4H7	146.0	1.82001e-40	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1408814_47	1125712.HMPREF1316_1550	76.6	0.0000000000000208	Peptidase S24-like	N/A
Pfam	UHGV-1408814_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1408814_47	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1408814_47	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1408814_47	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1408814_48	K14059	202.1	0	int; integrase	N/A
PHROG	UHGV-1408814_48	phrog_1	157.2	0	integrase	integration and excision
UniRef90	UHGV-1408814_48	UniRef90_A0A2K2UBR2	386.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1408814_48	1089553.Tph_c21970	152.0	6.52e-40	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1408814_48	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1408814_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1408814_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1408814_48	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A