UHGV-1408880 (vOTU-118708)

Viral Genome: UHGV-1408880

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1408880
vOTU ID	vOTU-118708
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0183054
Associated BioSample	SAMEA4545438
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.52 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.44
Jumbo phage	No

Genome content
Genome length (bp)	25,143
GC content	55.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	90%
Average CDS length (bps)	489.26
Total tRNA genes	5
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1408880_1	phrog_27197	92.5	3.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-1408880_1	394503.Ccel_3068	54.7	0.00000033	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1408880_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1408880_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408880_2	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408880_6	PF06718	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_8	phrog_7838	116.8	1.4e-34	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1408880_8	UniRef90_A0A8D9UGW3	174.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1408880_8	742767.HMPREF9456_02052	138.0	2.97e-38	N/A	N/A
structural_annotation	UHGV-1408880_8	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-1408880_9	K03111	141.8	6.60012e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1408880_9	phrog_44	143.3	1.10002e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1408880_9	UniRef90_D4K451	272.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1408880_9	718252.FP2_06770	272.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1408880_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1408880_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1408880_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1408880_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1408880_9	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1408880_10	K02086	69.1	6.1e-20	dnaD; DNA replication protein	N/A
PHROG	UHGV-1408880_10	phrog_186	79.2	5.9e-23	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1408880_10	UniRef90_A0A6N7TLH4	258.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1408880_10	877411.JMMA01000002_gene2292	69.3	0.0000000000489	N/A	N/A
Pfam	UHGV-1408880_10	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1408880_10	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1408880_10	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-1408880_10	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408880_11	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408880_12	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_15	phrog_757	52.2	0.0000000000000092	DNA methyltransferase	other
UniRef90	UHGV-1408880_15	UniRef90_A0A7J2R6L5	68.9	0.0000000000000216	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-1408880_15	748224.HMPREF9436_03069	105.0	8.66e-28	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1408880_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1408880_16	phrog_757	125.6	2.7e-37	DNA methyltransferase	other
UniRef90	UHGV-1408880_16	UniRef90_A0A417JTT5	238.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1408880_16	1095750.HMPREF9970_0173	162.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1408880_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1408880_17	K01160	61.0	3.3e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1408880_17	phrog_34	60.4	3.4e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1408880_17	UniRef90_A0A6N7TND6	218.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1408880_17	875454.BAEW01000002_gene491	135.0	2.87e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1408880_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1408880_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1408880_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_19	phrog_36	55.9	7.6e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1408880_19	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-1408880_21	UniRef90_UPI0018CC2891	113.0	3.35e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1408880_21	1235790.C805_00037	107.0	2.36e-27	N/A	N/A
structural_annotation	UHGV-1408880_21	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1408880_22	K06909	143.0	2.40042e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1408880_22	phrog_10250	178.5	0	N/A	unknown function
UniRef90	UHGV-1408880_22	UniRef90_A0A844D8I4	786.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1408880_22	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1408880_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1408880_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1408880_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1408880_22	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_23	phrog_64	115.5	1.8e-34	portal protein	head and packaging
UniRef90	UHGV-1408880_23	UniRef90_A0A6N7TNT3	736.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1408880_23	673376.F2VHW1_9CAUD	164.0	9.09443e-43	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1408880_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1408880_23	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_25	phrog_2468	82.1	8e-24	head morphogenesis	head and packaging
UniRef90	UHGV-1408880_25	UniRef90_A0A6N7TLR7	625.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1408880_25	1504822.CCNO01000013_gene286	111.0	4.45e-24	cell adhesion	N/A
Pfam	UHGV-1408880_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1408880_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408880_25	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_27	phrog_8680	201.0	0	N/A	unknown function
UniRef90	UHGV-1408880_27	UniRef90_A0A844D688	454.0	0	N/A	N/A
eggNOG-mapper	UHGV-1408880_27	1423790.BN53_04265	181.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1408880_27	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1408880_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1408880_27	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_29	phrog_5	51.1	0.000000000000032	tail completion or Neck1 protein	connector
UniRef90	UHGV-1408880_29	UniRef90_A0A6N7TNP6	295.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1408880_29	1123309.AQYB01000018_gene814	92.8	3.98e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1408880_29	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1408880_29	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1408880_29	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408880_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_32	phrog_544	155.7	0	major head protein	head and packaging
UniRef90	UHGV-1408880_32	UniRef90_R0BKA1	456.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1408880_32	476272.RUMHYD_01776	338.0	0	N/A	N/A
structural_annotation	UHGV-1408880_32	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_34	phrog_17977	43.4	0.0000000000045	N/A	unknown function
UniRef90	UHGV-1408880_34	UniRef90_A0A844DHJ8	120.0	1.15e-32	Phage head closure protein	N/A
structural_annotation	UHGV-1408880_34	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1408880_35	UniRef90_UPI0018835F0C	516.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1408880_35	411483.FAEPRAA2165_00757	150.0	2.31e-37	N/A	N/A
structural_annotation	UHGV-1408880_35	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-1408880_38	K23779	58.6	1.4e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1408880_38	phrog_1373	43.9	0.0000000000029	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1408880_38	944479.JQLX01000018_gene150	56.2	0.000000167	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1408880_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1408880_38	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
structural_annotation	UHGV-1408880_38	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1408880_40	phrog_3754	97.2	1.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-1408880_40	1235790.C805_00054	117.0	3.43e-32	N/A	N/A
PHROG	UHGV-1408880_41	phrog_21718	89.2	4.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-1408880_41	397290.C810_05210	83.6	3.85e-18	N/A	N/A
PHROG	UHGV-1408880_42	phrog_22984	70.5	2.1e-20	N/A	unknown function
PHROG	UHGV-1408880_43	phrog_16490	199.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1408880_43	397290.C810_01328	127.0	7.15e-32	N/A	N/A
PHROG	UHGV-1408880_44	phrog_20016	205.6	0	N/A	unknown function
UniRef90	UHGV-1408880_44	UniRef90_A0A285PT46	216.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1408880_44	1226322.HMPREF1545_00077	187.0	0	N/A	N/A
structural_annotation	UHGV-1408880_44	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1408880_45	PF12510	N/A	N/A	N/A	N/A