UHGV-1409587 (vOTU-070646)

Viral Genome: UHGV-1409587

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1409587
vOTU ID	vOTU-070646
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0263220
Associated BioSample	SAMN00037313
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9773
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.46
Jumbo phage	No

Genome content
Genome length (bp)	39,019
GC content	37.86%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	93%
Average CDS length (bps)	671.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1409587_1	K02395	48.6	0.000000000000088	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1409587_1	phrog_3513	56.4	3.1e-16	endolysin	lysis
UniRef90	UHGV-1409587_1	UniRef90_R5ZWS5	466.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-1409587_1	1423724.BAMM01000042_gene2173	59.3	0.000000207	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1409587_1	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-1409587_1	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1409587_1	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1409587_1	PF08230,NF004974,COG1705	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_2	phrog_199	73.1	3.3e-21	holin	lysis
UniRef90	UHGV-1409587_2	UniRef90_A0A3B8UJ75	240.0	0	Holin	N/A
eggNOG-mapper	UHGV-1409587_2	483218.BACPEC_01140	218.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1409587_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1409587_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1409587_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1409587_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_4	phrog_6616	159.5	0	tail protein	tail
UniRef90	UHGV-1409587_4	UniRef90_A0A356C4L7	758.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1409587_4	1294142.CINTURNW_1706	291.0	0	Phage minor structural protein	N/A
COG	UHGV-1409587_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1409587_4	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_5	phrog_1401	64.4	1.6e-18	N/A	unknown function
UniRef90	UHGV-1409587_5	UniRef90_UPI00129D2DCF	65.1	0.000000000077	N/A	N/A
eggNOG-mapper	UHGV-1409587_5	1294142.CINTURNW_1705	55.8	0.0000000458	N/A	N/A
structural_annotation	UHGV-1409587_5	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_6	phrog_1194	81.1	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1409587_6	33035.JPJF01000093_gene2242	153.0	0	N/A	N/A
structural_annotation	UHGV-1409587_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_7	phrog_1535	285.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1409587_7	UniRef90_R6TDK7	357.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-1409587_7	33035.JPJF01000093_gene2243	338.0	0	phage tail tape measure protein	N/A
COG	UHGV-1409587_7	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1409587_7	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_8	phrog_8355	88.1	4.5e-26	N/A	unknown function
UniRef90	UHGV-1409587_8	UniRef90_UPI0006BBA9AA	110.0	1.75e-29	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1409587_8	1151292.QEW_2424	105.0	5.07e-29	N/A	N/A
PHROG	UHGV-1409587_9	phrog_8300	67.4	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1409587_9	1151292.QEW_2425	60.8	0.000000000154	N/A	N/A
structural_annotation	UHGV-1409587_9	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_10	phrog_820	116.9	1.1e-34	major tail protein	tail
UniRef90	UHGV-1409587_10	UniRef90_T3DDR1	172.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-1409587_10	1151292.QEW_2426	172.0	0	N/A	N/A
structural_annotation	UHGV-1409587_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_11	phrog_2595	80.0	2.4e-23	head-tail connector protein	connector
UniRef90	UHGV-1409587_11	UniRef90_UPI001D068DAC	137.0	5.96e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-1409587_11	742740.HMPREF9474_03510	125.0	5.03e-35	N/A	N/A
Pfam	UHGV-1409587_11	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1409587_11	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_12	phrog_556	59.6	4.6e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-1409587_12	742740.HMPREF9474_03509	143.0	2.1594e-42	N/A	N/A
structural_annotation	UHGV-1409587_12	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_13	phrog_8710	132.8	1e-39	N/A	unknown function
eggNOG-mapper	UHGV-1409587_13	742740.HMPREF9474_03508	127.0	1.74e-36	N/A	N/A
structural_annotation	UHGV-1409587_13	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_14	phrog_541	68.9	7.2e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-1409587_14	483218.BACPEC_01153	146.0	7.14662e-44	N/A	N/A
PHROG	UHGV-1409587_16	phrog_422	211.1	0	major head protein	head and packaging
UniRef90	UHGV-1409587_16	UniRef90_W0U896	209.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1409587_16	1121947.AUHK01000002_gene935	217.0	0	N/A	N/A
structural_annotation	UHGV-1409587_16	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_17	phrog_2303	134.3	8.7e-40	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1409587_17	483218.BACPEC_01156	140.0	1.02e-38	N/A	N/A
PHROG	UHGV-1409587_18	phrog_872	170.5	0	N/A	unknown function
UniRef90	UHGV-1409587_18	UniRef90_A0A413P9Z7	212.0	0	N/A	N/A
eggNOG-mapper	UHGV-1409587_18	573413.Spirs_2170	176.0	0	N/A	N/A
Pfam	UHGV-1409587_18	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1409587_18	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1409587_18	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_20	phrog_581	253.9	0	minor head protein	head and packaging
UniRef90	UHGV-1409587_20	UniRef90_A0A413YU28	657.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1409587_20	33035.JPJF01000093_gene2255	436.0	0	N/A	N/A
Pfam	UHGV-1409587_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1409587_20	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1409587_20	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_21	phrog_533	283.8	0	portal protein	head and packaging
UniRef90	UHGV-1409587_21	UniRef90_A0A413YU90	943.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1409587_21	33035.JPJF01000093_gene2257	550.0	0	N/A	N/A
structural_annotation	UHGV-1409587_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1409587_22	K06909	88.0	1.2e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1409587_22	phrog_2	65.2	1.3e-18	terminase large subunit	head and packaging
UniRef90	UHGV-1409587_22	UniRef90_A0A413YU24	953.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1409587_22	1294142.CINTURNW_1023	518.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1409587_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1409587_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1409587_22	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1409587_23	K07474	151.9	5.60519e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1409587_23	phrog_51	160.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-1409587_23	UniRef90_A0A413YU49	367.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1409587_23	1499683.CCFF01000014_gene3916	149.0	9.94922e-43	Terminase small subunit	N/A
Pfam	UHGV-1409587_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1409587_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1409587_23	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_24	phrog_36	60.2	3.6e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1409587_24	397290.C810_01391	104.0	1.65e-26	N/A	N/A
structural_annotation	UHGV-1409587_24	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_25	phrog_625	65.0	7.6e-19	N/A	unknown function
UniRef90	UHGV-1409587_25	UniRef90_A0A413YU40	217.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1409587_25	397290.C810_01502	125.0	2.32e-35	N/A	N/A
structural_annotation	UHGV-1409587_25	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_29	phrog_2118	125.2	4.8e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1409587_29	UniRef90_R5ZJF1	285.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1409587_29	610130.Closa_0730	128.0	1.63e-36	HNH endonuclease	N/A
Pfam	UHGV-1409587_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1409587_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-1409587_30	UniRef90_UPI001D072F7E	66.6	0.000000000323	N/A	N/A
eggNOG-mapper	UHGV-1409587_30	1235790.C805_00035	65.1	0.0000000000817	N/A	N/A
KOfam	UHGV-1409587_33	K00558	232.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1409587_33	phrog_116	267.3	0	DNA methyltransferase	other
UniRef90	UHGV-1409587_33	UniRef90_A0A356C6K5	825.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1409587_33	1235800.C819_02255	650.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1409587_33	MTase_II_00020	116.1	7.4e-37	Type II methyltransferase	RM
Pfam	UHGV-1409587_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1409587_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1409587_33	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1409587_34	K07319	90.2	1.8e-26	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1409587_34	phrog_16	226.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1409587_34	UniRef90_A0A356C6C6	1498.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-1409587_34	1298920.KI911353_gene2709	1392.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1409587_34	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1409587_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1409587_34	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1409587_34	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_36	phrog_7566	92.2	3.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-1409587_36	1235800.C819_00511	96.7	6.76e-23	N/A	N/A
structural_annotation	UHGV-1409587_37	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-1409587_38	K03469	67.5	2.5e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1409587_38	phrog_531	64.9	1.3e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1409587_38	UniRef90_A0A413YU26	270.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1409587_38	941824.TCEL_01720	76.6	0.00000000000000123	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1409587_38	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1409587_38	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1409587_38	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_39	phrog_3584	242.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1409587_39	UniRef90_A0A4P8IFK4	343.0	0	N/A	N/A
eggNOG-mapper	UHGV-1409587_39	1235798.C817_02593	294.0	0	N/A	N/A
structural_annotation	UHGV-1409587_39	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-1409587_41	UniRef90_A0A356C6A4	154.0	0	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-1409587_41	318464.IO99_13850	65.5	0.000000000000379	Helix-turn-helix domain	N/A
Pfam	UHGV-1409587_41	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1409587_41	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1409587_41	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1409587_44	NF040556	N/A	N/A	N/A	N/A
UniRef90	UHGV-1409587_47	UniRef90_A0A3B9CCY2	98.2	1.07e-25	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1409587_47	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1409587_48	K22299	69.7	5.8e-20	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1409587_48	phrog_8	77.2	2.6e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1409587_48	UniRef90_A0A828T008	150.0	2.8026e-45	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1409587_48	411470.RUMGNA_03101	87.4	4.58e-21	transcriptional regulator, XRE family	N/A
PADLOC	UHGV-1409587_48	retron_type_VI_hth_cluster2_1	52.8	0.0000000000000093	N/A	Retron
Pfam	UHGV-1409587_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1409587_48	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1409587_48	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_49	phrog_87	84.8	7.7e-25	metallo-protease	other
UniRef90	UHGV-1409587_49	UniRef90_A0A3B9CDB4	196.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1409587_49	1235792.C808_05259	169.0	0	Zn peptidase	N/A
Pfam	UHGV-1409587_49	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1409587_49	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1409587_49	PF06114,COG3800	N/A	N/A	N/A	N/A
PHROG	UHGV-1409587_50	phrog_1847	507.5	0	N/A	unknown function
UniRef90	UHGV-1409587_50	UniRef90_R9JJN1	484.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-1409587_50	1235792.C808_05258	484.0	0	N/A	N/A
Pfam	UHGV-1409587_50	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-1409587_50	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-1409587_50	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-1409587_50	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
KOfam	UHGV-1409587_52	K07171	64.2	3.9e-20	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-1409587_52	phrog_1412	163.9	0	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1409587_52	UniRef90_A0A173WPV1	220.0	0	PemK-like protein	N/A
eggNOG-mapper	UHGV-1409587_52	1235792.C808_05257	186.0	0	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-1409587_52	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-1409587_52	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-1409587_52	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
KOfam	UHGV-1409587_53	K14059	224.4	0	int; integrase	N/A
PHROG	UHGV-1409587_53	phrog_1	210.9	0	integrase	integration and excision
UniRef90	UHGV-1409587_53	UniRef90_R6AKI6	816.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1409587_53	536233.CLO_0855	400.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-1409587_53	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1409587_53	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1409587_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1409587_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1409587_53	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1409587_54	515620.EUBELI_01242	50.8	0.000000296	Cytoplasmic, score 8.87	N/A