UHGV-1409716 (vOTU-105838)

Viral Genome: UHGV-1409716

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1409716
vOTU ID	vOTU-105838
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0182091
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.31 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.5
Jumbo phage	No

Genome content
Genome length (bp)	24,993
GC content	38.57%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	32
CDS density	93%
Average CDS length (bps)	724.31
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1409716_1	K14059	86.1	6.6e-25	int; integrase	N/A
PHROG	UHGV-1409716_1	phrog_1	92.9	4.5e-27	integrase	integration and excision
UniRef90	UHGV-1409716_1	UniRef90_UPI001E3DEF86	238.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1409716_1	157924.Q7Y4M3_9CAUD	280.0	0	Phage integrase family	N/A
Pfam	UHGV-1409716_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
PHROG	UHGV-1409716_2	phrog_1529	97.9	1.5e-28	N/A	unknown function
UniRef90	UHGV-1409716_2	UniRef90_A0A062WUP7	110.0	6.73e-31	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1409716_2	1035189.HMPREF9954_1916	113.0	1.91e-32	N/A	N/A
structural_annotation	UHGV-1409716_2	PF01381,NF040507,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1409716_3	K01447	59.7	5.6e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1409716_3	phrog_1110	342.9	0	endolysin	lysis
UniRef90	UHGV-1409716_3	UniRef90_X8KD37	507.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1409716_3	1282664.H354_06746	514.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1409716_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1409716_3	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
Pfam	UHGV-1409716_3	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-1409716_3	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-1409716_3	PF19127,PF01510,TIGR04035,COG5263	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_4	phrog_297	61.5	1.4e-17	holin	lysis
UniRef90	UHGV-1409716_4	UniRef90_E6KJ35	138.0	2.34003e-41	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1409716_4	1282664.H354_07765	140.0	6.75426e-43	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1409716_4	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1409716_4	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1409716_4	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1409716_4	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_5	phrog_199	70.1	2.7e-20	holin	lysis
UniRef90	UHGV-1409716_5	UniRef90_A0A109W864	287.0	0	Holin	N/A
eggNOG-mapper	UHGV-1409716_5	1000588.HMPREF9965_1686	243.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1409716_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1409716_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1409716_5	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_6	phrog_1554	207.5	0	N/A	unknown function
UniRef90	UHGV-1409716_6	UniRef90_A0A359YI08	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-1409716_6	1005705.HMPREF9967_1055	339.0	0	N/A	N/A
structural_annotation	UHGV-1409716_6	PF07104	N/A	N/A	N/A	N/A
UniRef90	UHGV-1409716_7	UniRef90_F5W039	48.5	0.00000396	Conserved domain protein	N/A
PHROG	UHGV-1409716_8	phrog_1330	637.0	0	tail protein	tail
UniRef90	UHGV-1409716_8	UniRef90_A0A1F0ZPD4	1123.0	0	Gp58 domain-containing protein	N/A
eggNOG-mapper	UHGV-1409716_8	537874.B3GW15_9CAUD	879.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1409716_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1409716_8	PF07902	N/A	N/A	gp58-like protein	Gp58
NCBIFam	UHGV-1409716_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1409716_8	PF14594,PF07902,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_9	phrog_33	70.1	4.7e-20	distal tail protein Dit	tail
UniRef90	UHGV-1409716_9	UniRef90_A0A428GXX8	287.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1409716_9	537874.B3GW14_9CAUD	265.0	0	Phage tail protein	N/A
structural_annotation	UHGV-1409716_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1409716_10	K20283	47.6	0.0000000000000099	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1409716_10	phrog_1293	1244.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1409716_10	UniRef90_A0A2H4JEN9	1805.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1409716_10	1282664.H354_07735	1246.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1409716_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1409716_10	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1409716_10	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1409716_10	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_11	phrog_187	46.8	0.00000000000046	head-tail adaptor	connector
UniRef90	UHGV-1409716_11	UniRef90_W1TSL8	142.0	1.24001e-41	N/A	N/A
structural_annotation	UHGV-1409716_11	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_12	phrog_88	151.7	2.8026e-45	major tail protein	tail
UniRef90	UHGV-1409716_12	UniRef90_K8MKC2	350.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-1409716_12	1289596.M1PRQ7_9CAUD	262.0	0	Pfam:Phage_TTP_1	N/A
NCBIFam	UHGV-1409716_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1409716_12	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_13	phrog_78	97.7	9.5e-29	tail terminator	connector
UniRef90	UHGV-1409716_13	UniRef90_A0A4U9Y315	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-1409716_13	1123309.AQYB01000019_gene899	188.0	0	N/A	N/A
structural_annotation	UHGV-1409716_13	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_14	phrog_5	44.0	0.0000000000057	tail completion or Neck1 protein	connector
UniRef90	UHGV-1409716_14	UniRef90_K8MSD6	208.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1409716_14	1154860.SAG0136_08110	149.0	8.40779e-45	N/A	N/A
Pfam	UHGV-1409716_14	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1409716_14	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1409716_14	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_15	phrog_25	73.0	3.4e-21	head closure Hc1	connector
UniRef90	UHGV-1409716_15	UniRef90_A0A1X1KND5	199.0	0	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-1409716_15	1154860.SAG0136_08105	144.0	3.1249e-43	Phage head-tail joining protein	N/A
Pfam	UHGV-1409716_15	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-1409716_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_16	phrog_40	66.6	2.5e-19	head-tail adaptor Ad1	connector
UniRef90	UHGV-1409716_16	UniRef90_UPI001157CE27	197.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1409716_16	764299.STRIC_0104	137.0	4.11996e-41	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1409716_16	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-1409716_16	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1409716_16	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_17	phrog_10	193.0	0	major head protein	head and packaging
UniRef90	UHGV-1409716_17	UniRef90_UPI00115B8362	677.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1409716_17	1154860.SAG0136_08090	456.0	0	capsid protein	N/A
Pfam	UHGV-1409716_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1409716_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1409716_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1409716_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1409716_18	K01358	129.2	4.3e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1409716_18	phrog_94	206.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1409716_18	UniRef90_A0A428GXI4	395.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1409716_18	1123309.AQYB01000019_gene894	358.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1409716_18	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1409716_18	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1409716_18	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_19	phrog_12	226.8	0	portal protein	head and packaging
UniRef90	UHGV-1409716_19	UniRef90_A0A4D6A864	758.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1409716_19	1403946.Q615_SPAC00127G0138	641.0	0	Phage portal protein	N/A
Pfam	UHGV-1409716_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1409716_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1409716_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1409716_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_20	phrog_9	377.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1409716_20	UniRef90_A0A1X1KNW8	1058.0	0	Amino acid transporter	N/A
eggNOG-mapper	UHGV-1409716_20	1154860.SAG0136_08065	959.0	0	Terminase	N/A
Pfam	UHGV-1409716_20	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1409716_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1409716_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1409716_20	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_21	phrog_83	131.8	3.9e-39	terminase small subunit	head and packaging
UniRef90	UHGV-1409716_21	UniRef90_A0A1X1KND2	286.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1409716_21	1314.HKU360_01229	202.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1409716_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-1409716_21	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-1409716_21	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1409716_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_22	phrog_589	76.2	3e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1409716_22	UniRef90_A0A2H4JDE9	217.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1409716_22	1154860.SAG0136_08055	177.0	0	HNH nucleases	N/A
Pfam	UHGV-1409716_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1409716_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1409716_23	phrog_36	87.7	1.2e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-1409716_23	UniRef90_UPI00066E8398	208.0	0	N/A	N/A
eggNOG-mapper	UHGV-1409716_23	936580.HMPREF1516_0728	104.0	1.04e-26	sigma factor activity	N/A
Pfam	UHGV-1409716_23	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1409716_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1409716_23	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_24	phrog_8	42.6	2.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1409716_24	UniRef90_UPI00066E0F72	177.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1409716_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1409716_24	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1409716_24	PF01381,PF13560,MF_00535,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_25	phrog_236	108.3	1.3e-31	nucleotide kinase	other
UniRef90	UHGV-1409716_25	UniRef90_I0S8Y0	134.0	2.05e-39	PF11753 family protein	N/A
eggNOG-mapper	UHGV-1409716_25	1403946.Q615_SPAC00127G0145	123.0	8.07e-36	N/A	N/A
Pfam	UHGV-1409716_25	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-1409716_26	phrog_323	99.9	2.1e-29	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1409716_26	UniRef90_Q708P1	345.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1409716_26	12402.Q708P1_9CAUD	345.0	0	N/A	N/A
Pfam	UHGV-1409716_26	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
Pfam	UHGV-1409716_26	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
dbAPIS	UHGV-1409716_26	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
PHROG	UHGV-1409716_27	phrog_12243	133.3	4.3e-40	N/A	unknown function
PHROG	UHGV-1409716_28	phrog_8899	230.8	0	N/A	unknown function
UniRef90	UHGV-1409716_28	UniRef90_A0A139N1V3	202.0	0	N/A	N/A
PHROG	UHGV-1409716_29	phrog_884	66.1	4.4e-19	N/A	unknown function
UniRef90	UHGV-1409716_29	UniRef90_UPI00094EDA92	123.0	2.11e-35	N/A	N/A
eggNOG-mapper	UHGV-1409716_29	768726.HMPREF9178_1075	55.5	0.0000000309	N/A	N/A
Pfam	UHGV-1409716_29	PF07116	N/A	N/A	N/A	DUF1372
structural_annotation	UHGV-1409716_29	PF07116,COG3585	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_30	phrog_3606	50.4	0.000000000000035	N/A	unknown function
UniRef90	UHGV-1409716_31	UniRef90_A0A428HZ52	79.0	5.92e-18	Putative nickel-responsive regulator	N/A
structural_annotation	UHGV-1409716_31	PF07878,NF010302,COG3609	N/A	N/A	N/A	N/A
PHROG	UHGV-1409716_32	phrog_13581	147.0	3.36312e-44	N/A	unknown function
eggNOG-mapper	UHGV-1409716_32	768726.HMPREF9178_1076	163.0	0	N/A	N/A