UHGV-1409905 (vOTU-065293)

Viral Genome: UHGV-1409905

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1409905
vOTU ID	vOTU-065293
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0253632
Associated BioSample	SAMN02334065
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.13
Jumbo phage	No

Genome content
Genome length (bp)	37,361
GC content	56.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	94%
Average CDS length (bps)	506.74
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1409905_1	phrog_8462	117.7	1.4e-34	tail length tape measure protein	tail
UniRef90	UHGV-1409905_1	UniRef90_A0A1M6L1P7	189.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1409905_1	1195236.CTER_5104	184.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1409905_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1409905_1	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_2	phrog_37549	43.0	0.00000000000034	virion structural protein	head and packaging
UniRef90	UHGV-1409905_2	UniRef90_A0A3D0W045	224.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1409905_2	1195236.CTER_5103	110.0	2.66e-22	N/A	N/A
structural_annotation	UHGV-1409905_2	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_3	phrog_26795	86.4	8.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1409905_3	997296.PB1_16154	135.0	8.59e-34	N/A	N/A
structural_annotation	UHGV-1409905_3	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1409905_4	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1409905_5	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_7	phrog_19111	41.7	0.0000000000072	N/A	unknown function
eggNOG-mapper	UHGV-1409905_7	1232428.CAVO010000002_gene2342	69.7	0.0000000000361	ATPase involved in DNA repair	N/A
COG	UHGV-1409905_7	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
UniRef90	UHGV-1409905_8	UniRef90_A0A411ZUM8	197.0	0	Leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-1409905_8	471875.RUMLAC_02240	125.0	8.55e-29	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-1409905_8	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-1409905_8	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1409905_8	PF13306,NF041351	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1409905_10	411471.SUBVAR_06976	50.4	0.0000065	N/A	N/A
structural_annotation	UHGV-1409905_10	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_11	phrog_937	52.2	0.000000000000012	hemolysin	other
eggNOG-mapper	UHGV-1409905_11	1519439.JPJG01000023_gene533	67.4	0.000000000000242	N/A	N/A
PHROG	UHGV-1409905_13	phrog_13256	66.6	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1409905_13	1226322.HMPREF1545_00132	75.1	5.18e-17	N/A	N/A
PHROG	UHGV-1409905_14	phrog_14030	127.6	8.7e-38	N/A	unknown function
UniRef90	UHGV-1409905_14	UniRef90_R6LL81	247.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1409905_14	1121866.AUGK01000003_gene1444	97.1	2.09e-20	amidase activity	N/A
COG	UHGV-1409905_14	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1409905_15	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1409905_17	760568.Desku_0885	57.8	0.0000000929	N/A	N/A
structural_annotation	UHGV-1409905_17	PF14528,PF05204,MF_01420,TIGR00647,COG3780	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1409905_18	1160721.RBI_I00206	55.5	0.00000000115	N/A	N/A
structural_annotation	UHGV-1409905_18	PF10723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1409905_19	1304866.K413DRAFT_4686	75.5	2.02e-17	N/A	N/A
PHROG	UHGV-1409905_21	phrog_16490	56.7	5.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1409905_21	1408437.JNJN01000043_gene803	54.3	0.00000234	N/A	N/A
structural_annotation	UHGV-1409905_22	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1409905_23	UniRef90_A0A8F0WD75	81.6	1.65e-16	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1409905_23	1408437.JNJN01000043_gene801	78.2	6.37e-16	N/A	N/A
KOfam	UHGV-1409905_24	K06400	372.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1409905_24	phrog_95	362.5	0	integrase	integration and excision
UniRef90	UHGV-1409905_24	UniRef90_UPI0019572FB3	519.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1409905_24	1235835.C814_00825	430.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1409905_24	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1409905_24	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1409905_24	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1409905_24	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1409905_24	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-1409905_25	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1409905_25	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1409905_26	K01972	44.9	0.00000000000099	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	N/A
PHROG	UHGV-1409905_26	phrog_3989	314.3	0	N/A	unknown function
UniRef90	UHGV-1409905_26	UniRef90_R5ENY0	441.0	0	BRCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1409905_26	755731.Clo1100_2167	290.0	0	twin BRCT domain	N/A
Pfam	UHGV-1409905_26	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-1409905_26	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-1409905_26	PF00533,NF004844	N/A	N/A	N/A	N/A
KOfam	UHGV-1409905_28	K22300	54.5	0.0000000000000027	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1409905_28	phrog_4	54.1	0.0000000000000038	transcriptional repressor	transcription regulation
UniRef90	UHGV-1409905_28	UniRef90_A0A2U1BEG8	129.0	3.04e-36	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1409905_28	445972.ANACOL_03315	110.0	1.14e-29	N/A	N/A
PADLOC	UHGV-1409905_28	retron_type_VI_hth_cluster2_1	42.3	0.000000000015	N/A	Retron
Pfam	UHGV-1409905_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1409905_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1409905_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-1409905_31	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1409905_31	PF12728,NF040990	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1409905_33	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1409905_34	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_37	phrog_9298	59.9	3.1e-17	radical SAM domain protein	other
UniRef90	UHGV-1409905_37	UniRef90_A0A1C5YXG3	308.0	0	Radical SAM superfamily	N/A
eggNOG-mapper	UHGV-1409905_37	742738.HMPREF9460_03770	293.0	0	radical SAM domain protein	N/A
COG	UHGV-1409905_37	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1409905_37	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
UniRef90	UHGV-1409905_38	UniRef90_A0A748E6J8	55.5	0.000000335	N/A	N/A
Pfam	UHGV-1409905_38	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1409905_38	NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1409905_39	1235792.C808_01244	148.0	1.60995e-41	N/A	N/A
PHROG	UHGV-1409905_40	phrog_38832	59.5	6.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1409905_40	665956.HMPREF1032_00143	67.4	0.0000000000096	N/A	N/A
structural_annotation	UHGV-1409905_40	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_42	phrog_599	48.1	0.00000000000023	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1409905_42	UniRef90_A0A412AV49	82.8	4.25e-19	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-1409905_42	1235790.C805_00069	67.0	0.000000000000113	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1409905_42	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-1409905_42	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1409905_42	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_47	phrog_190	106.5	2.3e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1409905_47	UniRef90_UPI0006C2AC63	122.0	6.05e-33	N/A	N/A
eggNOG-mapper	UHGV-1409905_47	693746.OBV_25250	114.0	1.6e-30	N/A	N/A
Pfam	UHGV-1409905_47	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1409905_47	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_54	phrog_21498	285.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1409905_54	78346.BRUM_0376	252.0	0	DNA binding	N/A
COG	UHGV-1409905_54	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1409905_54	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_55	phrog_3584	119.6	2.2e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1409905_55	537013.CLOSTMETH_02141	79.0	0.00000000000000337	N/A	N/A
structural_annotation	UHGV-1409905_55	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1409905_56	693746.OBV_25230	80.5	1.58e-17	N/A	N/A
structural_annotation	UHGV-1409905_56	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_57	phrog_119	53.9	0.0000000000000025	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1409905_57	UniRef90_A0A174XSZ8	123.0	2.04e-34	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-1409905_57	1235793.C809_01915	124.0	6.39e-35	HNH endonuclease	N/A
Pfam	UHGV-1409905_57	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1409905_57	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1409905_58	phrog_1066	128.3	2.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-1409905_58	1382358.JHVN01000024_gene1703	127.0	2.05e-36	N/A	N/A
structural_annotation	UHGV-1409905_58	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_59	phrog_9	373.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1409905_59	UniRef90_A0A1Y3W5R1	778.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1409905_59	1203606.HMPREF1526_00981	727.0	0	Terminase	N/A
Pfam	UHGV-1409905_59	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1409905_59	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1409905_59	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1409905_59	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_60	phrog_12	171.2	0	portal protein	head and packaging
UniRef90	UHGV-1409905_60	UniRef90_UPI001898FCCE	501.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1409905_60	626523.GCWU000342_01027	499.0	0	Portal protein	N/A
Pfam	UHGV-1409905_60	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1409905_60	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1409905_60	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1409905_61	K01358	129.4	4e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1409905_61	phrog_94	198.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1409905_61	UniRef90_UPI0018979DC8	201.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1409905_61	1280689.AUJC01000011_gene1520	182.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1409905_61	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1409905_61	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1409905_61	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_62	phrog_10	183.5	0	major head protein	head and packaging
UniRef90	UHGV-1409905_62	UniRef90_UPI00189AE5FE	420.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1409905_62	1280689.AUJC01000011_gene1521	385.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1409905_62	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1409905_62	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1409905_62	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1409905_62	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_63	phrog_5223	44.3	0.0000000000023	neck protein	connector
UniRef90	UHGV-1409905_63	UniRef90_A0A6N8H2B4	54.3	0.000000171	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1409905_63	931626.Awo_c31020	50.8	0.000000655	N/A	N/A
PHROG	UHGV-1409905_64	phrog_1951	74.5	9.4e-22	head-tail adaptor	connector
UniRef90	UHGV-1409905_64	UniRef90_A0A1F8UNT5	63.2	0.0000000000699	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1409905_64	1094508.Tsac_2422	53.5	0.0000000802	Phage head-tail joining protein	N/A
Pfam	UHGV-1409905_64	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1409905_64	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1409905_64	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1409905_64	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1409905_65	1121324.CLIT_8c00710	65.1	0.00000000000351	N/A	N/A
structural_annotation	UHGV-1409905_65	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_66	phrog_5	45.5	0.0000000000017	tail completion or Neck1 protein	connector
Pfam	UHGV-1409905_66	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1409905_66	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_67	phrog_88	81.4	1.2e-23	major tail protein	tail
UniRef90	UHGV-1409905_67	UniRef90_S0FUN2	108.0	3.28e-26	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1409905_67	1195236.CTER_5106	108.0	5.51e-27	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1409905_67	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1409905_67	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1409905_67	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1409905_68	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1409905_69	phrog_10613	67.8	1.9e-19	tail length tape measure protein	tail
UniRef90	UHGV-1409905_69	UniRef90_A0A847CC82	89.4	1.48e-20	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-1409905_69	1195236.CTER_5104	92.0	2.26e-20	nuclear chromosome segregation	N/A
COG	UHGV-1409905_69	COG5283	N/A	N/A	Phage-related tail protein	N/A