UHGV-1410004 (vOTU-027335)

Viral Genome: UHGV-1410004

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1410004
vOTU ID	vOTU-027335
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0253948
Associated BioSample	SAMN05826617
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.78 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.74
Jumbo phage	No

Genome content
Genome length (bp)	37,411
GC content	50.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	90%
Average CDS length (bps)	504.40
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1410004_1	phrog_801	41.9	0.000000000017	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-1410004_1	UniRef90_A0A1C6IRL8	159.0	0	N/A	N/A
Pfam	UHGV-1410004_1	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
PHROG	UHGV-1410004_5	phrog_22543	42.7	0.0000000000077	N/A	unknown function
eggNOG-mapper	UHGV-1410004_7	665956.HMPREF1032_03084	46.6	0.00000699	N/A	N/A
PHROG	UHGV-1410004_8	phrog_25732	68.4	7.3e-20	N/A	unknown function
structural_annotation	UHGV-1410004_8	NF011227	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_10	phrog_757	113.4	1.4e-33	DNA methyltransferase	other
UniRef90	UHGV-1410004_10	UniRef90_A0A8D9PDD1	364.0	0	DNA (Cytosine 5) methyltransferase	N/A
eggNOG-mapper	UHGV-1410004_10	622312.ROSEINA2194_01264	337.0	0	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-1410004_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1410004_10	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1410004_11	UniRef90_UPI0018AC14ED	75.1	0.00000000000000108	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1410004_11	742738.HMPREF9460_04054	72.8	0.00000000000000229	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-1410004_11	PF14354,TIGR03655	N/A	N/A	N/A	N/A
KOfam	UHGV-1410004_12	K01160	50.4	0.000000000000058	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1410004_12	phrog_1682	72.4	6.9e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1410004_12	UniRef90_A0A1C5N534	249.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1410004_12	1235790.C805_00029	140.0	1.82996e-41	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1410004_12	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1410004_12	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1410004_14	K17680	174.2	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1410004_14	phrog_239	155.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1410004_14	UniRef90_A0A1C5N602	851.0	0	DNA repair protein RadA	N/A
eggNOG-mapper	UHGV-1410004_14	1378168.N510_01441	528.0	0	N/A	N/A
Pfam	UHGV-1410004_14	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1410004_14	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1410004_14	PF03796,MF_04154,NF006606,COG0467	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_15	phrog_186	47.0	0.00000000000041	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
NCBIFam	UHGV-1410004_15	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
KOfam	UHGV-1410004_16	K03111	148.0	8.96831e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1410004_16	phrog_44	149.8	1.4013e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1410004_16	UniRef90_A0A1C5N5W1	289.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1410004_16	1378168.N510_01674	197.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1410004_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1410004_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1410004_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1410004_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1410004_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_17	phrog_7545	60.7	3e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1410004_17	UniRef90_A0A8J6J193	317.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1410004_17	477184.KYC_12518	54.3	0.000000608	HNH endonuclease	N/A
Pfam	UHGV-1410004_17	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1410004_17	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_18	phrog_7370	48.0	0.00000000000019	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1410004_18	UniRef90_A0A2Z4QA94	171.0	0	Recombination protein	N/A
eggNOG-mapper	UHGV-1410004_18	445972.ANACOL_01826	71.6	0.00000000000000817	HNH nucleases	N/A
Pfam	UHGV-1410004_18	PF13391	N/A	N/A	HNH endonuclease	HNH_2
PHROG	UHGV-1410004_19	phrog_1389	67.8	1.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1410004_19	1347392.CCEZ01000060_gene3269	102.0	6.22e-27	N/A	N/A
structural_annotation	UHGV-1410004_19	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_20	phrog_7838	151.8	1.4013e-45	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1410004_20	UniRef90_A0A8D9UGW3	236.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1410004_20	742767.HMPREF9456_02052	180.0	0	N/A	N/A
structural_annotation	UHGV-1410004_20	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_21	phrog_253	108.2	7.1e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1410004_21	UniRef90_A0A1C5N4H2	307.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1410004_21	411470.RUMGNA_02192	134.0	3.49e-38	Siphovirus Gp157	N/A
Pfam	UHGV-1410004_21	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1410004_21	PF05565	N/A	N/A	N/A	N/A
KOfam	UHGV-1410004_25	K22300	69.0	7.6e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1410004_25	phrog_8	63.7	2.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1410004_25	UniRef90_A0A412AWL2	71.2	0.00000000000117	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1410004_25	397288.C806_02996	62.4	0.00000000129	sequence-specific DNA binding	N/A
PADLOC	UHGV-1410004_25	retron_type_VI_hth_cluster2_1	45.5	0.000000000000018	N/A	Retron
Pfam	UHGV-1410004_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1410004_25	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1410004_25	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1410004_26	UniRef90_UPI0011C7F4D0	89.4	3.11e-22	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1410004_26	272562.CA_C1947	48.9	0.00000186	sequence-specific DNA binding	N/A
Pfam	UHGV-1410004_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1410004_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1410004_26	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_32	phrog_4583	43.8	0.0000000000029	transcriptional repressor	transcription regulation
UniRef90	UHGV-1410004_32	UniRef90_A0A8J6J2B4	141.0	1.24996e-42	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1410004_32	642492.Clole_2800	68.6	0.0000000000000138	N/A	N/A
Pfam	UHGV-1410004_32	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-1410004_32	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1410004_33	K01356	152.9	2.8026e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1410004_33	phrog_4	124.7	8.7e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-1410004_33	UniRef90_A0A8J6J9S0	409.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1410004_33	411483.FAEPRAA2165_03041	157.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1410004_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1410004_33	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1410004_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1410004_33	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_34	phrog_37750	88.3	8.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1410004_34	1087481.AGFX01000037_gene4346	101.0	1.32e-23	N/A	N/A
PHROG	UHGV-1410004_35	phrog_33872	51.2	3.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1410004_35	693746.OBV_19740	49.3	0.00000403	N/A	N/A
KOfam	UHGV-1410004_36	K14623	99.4	5.3e-29	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-1410004_36	phrog_15286	432.8	0	N/A	unknown function
UniRef90	UHGV-1410004_36	UniRef90_A0A1C5N3L4	544.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1410004_36	1235803.C825_00255	353.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1410004_36	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1410004_36	COG5380	N/A	N/A	Lipase chaperone LimK	N/A
structural_annotation	UHGV-1410004_36	PF09669,NF008573,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-1410004_37	K14059	223.4	0	int; integrase	N/A
PHROG	UHGV-1410004_37	phrog_1	212.9	0	integrase	integration and excision
UniRef90	UHGV-1410004_37	UniRef90_A0A1C5N3H1	733.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1410004_37	1321814.HMPREF9089_00905	210.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1410004_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1410004_37	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1410004_37	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1410004_38	1378168.N510_03079	124.0	1.93e-31	N/A	N/A
eggNOG-mapper	UHGV-1410004_39	1408437.JNJN01000043_gene802	186.0	0	N/A	N/A
PHROG	UHGV-1410004_40	phrog_16490	265.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1410004_40	1408437.JNJN01000043_gene803	296.0	0	N/A	N/A
eggNOG-mapper	UHGV-1410004_42	445972.ANACOL_01878	61.2	0.00000000133	N/A	N/A
structural_annotation	UHGV-1410004_44	PF16509,MF_00245,NF008895,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1410004_45	K01447	67.3	2.9e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1410004_45	phrog_15001	171.2	0	endolysin	lysis
UniRef90	UHGV-1410004_45	UniRef90_A0A1C6D3S9	508.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1410004_45	1378168.N510_01539	313.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1410004_45	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1410004_45	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1410004_45	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_47	phrog_1129	68.9	5e-20	holin	lysis
UniRef90	UHGV-1410004_47	UniRef90_A0A416QZD1	126.0	3.54e-36	Enolase	N/A
eggNOG-mapper	UHGV-1410004_47	1007096.BAGW01000036_gene2663	125.0	2.09e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1410004_47	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1410004_47	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_48	phrog_937	55.2	0.0000000000000012	hemolysin	other
eggNOG-mapper	UHGV-1410004_48	1232443.BAIA02000135_gene1405	102.0	1.39e-26	N/A	N/A
PHROG	UHGV-1410004_52	phrog_13589	72.3	2.49431e-43	N/A	unknown function
eggNOG-mapper	UHGV-1410004_52	411471.SUBVAR_06929	330.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1410004_52	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-1410004_53	1297617.JPJD01000099_gene2171	107.0	1.55e-24	Collagen triple helix repeat protein	N/A
COG	UHGV-1410004_53	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-1410004_53	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_55	phrog_32744	683.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1410004_55	1120998.AUFC01000030_gene2247	238.0	0	N/A	N/A
structural_annotation	UHGV-1410004_55	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_56	phrog_1194	73.6	2.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1410004_56	1120998.AUFC01000030_gene2246	124.0	1.61e-33	N/A	N/A
structural_annotation	UHGV-1410004_56	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-1410004_57	K03529	40.2	0.0000000000095	smc; chromosome segregation protein	N/A
PHROG	UHGV-1410004_57	phrog_1535	393.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1410004_57	UniRef90_A0A1C5N801	1059.0	0	ATPase involved in DNA repair	N/A
eggNOG-mapper	UHGV-1410004_57	673837.D2IZU8_9CAUD	194.0	0	peptidoglycan catabolic process	N/A
PHROG	UHGV-1410004_58	phrog_706	85.1	8.6e-25	N/A	unknown function
UniRef90	UHGV-1410004_58	UniRef90_A0A1C5N876	392.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1410004_58	999411.HMPREF1092_03313	72.8	0.000000000000259	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1410004_58	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1410004_58	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_59	phrog_11299	48.3	0.00000000000015	N/A	unknown function
UniRef90	UHGV-1410004_59	UniRef90_A0A2Z4QA03	98.6	9.85e-24	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-1410004_59	1120746.CCNL01000014_gene2103	110.0	4.86e-29	N/A	N/A
structural_annotation	UHGV-1410004_59	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_60	phrog_3099	124.1	9e-37	N/A	unknown function
eggNOG-mapper	UHGV-1410004_60	645991.Sgly_0346	108.0	8.03e-28	N/A	N/A
structural_annotation	UHGV-1410004_60	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1410004_61	877415.JNJQ01000019_gene1782	60.8	0.0000000274	N/A	N/A
PHROG	UHGV-1410004_62	phrog_3266	47.0	0.00000000000036	tail completion	connector
UniRef90	UHGV-1410004_62	UniRef90_A0A2Z4QA01	105.0	9.36e-27	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1410004_62	1232443.BAIA02000078_gene24	127.0	9.98e-36	N/A	N/A
structural_annotation	UHGV-1410004_62	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_63	phrog_556	67.5	1.4e-19	minor head protein	head and packaging
UniRef90	UHGV-1410004_63	UniRef90_A0A1C5N8K8	273.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1410004_63	1226322.HMPREF1545_00054	158.0	0	Minor capsid protein	N/A
Pfam	UHGV-1410004_63	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1410004_63	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_64	phrog_3366	98.9	4.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-1410004_64	1226322.HMPREF1545_00053	154.0	0	N/A	N/A
structural_annotation	UHGV-1410004_64	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1410004_65	phrog_541	106.8	1.2e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-1410004_65	1120998.AUFC01000030_gene2237	67.4	0.00000000000173	N/A	N/A
PHROG	UHGV-1410004_66	phrog_10	173.4	0	major head protein	head and packaging
UniRef90	UHGV-1410004_66	UniRef90_U2SBS0	619.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-1410004_66	1226322.HMPREF1545_00050	619.0	0	Phage capsid family	N/A
Pfam	UHGV-1410004_66	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1410004_66	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1410004_66	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1410004_66	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1410004_67	1226322.HMPREF1545_00049	243.0	0	N/A	N/A