UHGV-1411961 (vOTU-075493)

Viral Genome: UHGV-1411961

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1411961
vOTU ID	vOTU-075493
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0293626
Associated BioSample	SAMN06115418
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.8 (High-quality)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.88
Jumbo phage	No

Genome content
Genome length (bp)	45,078
GC content	45.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	91%
Average CDS length (bps)	638.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1411961_2	phrog_16490	86.6	5.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1411961_2	445972.ANACOL_01880	85.1	4.7e-17	N/A	N/A
eggNOG-mapper	UHGV-1411961_3	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-1411961_4	phrog_21718	43.5	0.0000000000052	N/A	unknown function
UniRef90	UHGV-1411961_5	UniRef90_A0A316S6W0	99.8	7.21e-26	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-1411961_5	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-1411961_5	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1411961_5	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1411961_7	1392502.JNIO01000008_gene1280	223.0	0	N/A	N/A
structural_annotation	UHGV-1411961_7	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_8	phrog_918	97.2	7.4e-29	N/A	unknown function
UniRef90	UHGV-1411961_8	UniRef90_UPI000EC62F11	146.0	4.34403e-44	N/A	N/A
eggNOG-mapper	UHGV-1411961_8	537007.BLAHAN_05515	139.0	6.18954e-42	N/A	N/A
Pfam	UHGV-1411961_8	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1411961_8	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_10	phrog_4105	83.3	2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1411961_10	33035.JPJF01000043_gene996	78.2	4.82e-17	N/A	N/A
PHROG	UHGV-1411961_11	phrog_1807	74.5	1.4e-21	tail fiber protein	tail
UniRef90	UHGV-1411961_11	UniRef90_A0A1Q6R2G9	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-1411961_11	1408428.JNJP01000079_gene3366	65.1	0.000000000321	N/A	N/A
Pfam	UHGV-1411961_11	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-1411961_11	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_12	phrog_19618	76.1	3.6e-22	tail collar protein	tail
UniRef90	UHGV-1411961_12	UniRef90_A0A354WRB2	144.0	1.35e-39	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-1411961_12	556269.ACDQ01000006_gene1705	127.0	1.2e-31	Phage Tail Collar Domain	N/A
Pfam	UHGV-1411961_12	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-1411961_12	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1411961_12	PF07484,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_13	phrog_13893	61.6	8.2e-18	tail protein	tail
eggNOG-mapper	UHGV-1411961_13	1123288.SOV_1c10770	84.3	0.00000000000000459	Right handed beta helix region	N/A
COG	UHGV-1411961_13	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-1411961_13	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_15	phrog_9880	59.8	1.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-1411961_15	1123288.SOV_1c10760	91.7	2.3e-18	N/A	N/A
PHROG	UHGV-1411961_16	phrog_9880	446.7	0	N/A	unknown function
UniRef90	UHGV-1411961_16	UniRef90_A0A1Q6RQR6	4113.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1411961_16	1123288.SOV_1c10750	187.0	1.68156e-44	N/A	N/A
Pfam	UHGV-1411961_16	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-1411961_17	phrog_10475	45.1	0.0000000000006	endolysin	lysis
UniRef90	UHGV-1411961_17	UniRef90_A0A1Q6RQM5	1240.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1411961_17	1123288.SOV_2c10740	196.0	0	N/A	N/A
Pfam	UHGV-1411961_17	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-1411961_17	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_18	phrog_418	129.4	7.4e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1411961_18	568816.Acin_1826	102.0	2.96e-24	N/A	N/A
structural_annotation	UHGV-1411961_18	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_19	phrog_308	106.5	2e-31	internal virion protein	head and packaging
structural_annotation	UHGV-1411961_19	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_20	phrog_376	607.4	0	tail protein	tail
UniRef90	UHGV-1411961_20	UniRef90_A0A0U1KV93	358.0	0	N/A	N/A
eggNOG-mapper	UHGV-1411961_20	568816.Acin_1828	684.0	0	N/A	N/A
structural_annotation	UHGV-1411961_20	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_21	phrog_394	155.5	0	tail protein	tail
UniRef90	UHGV-1411961_21	UniRef90_A0A8B2QU77	101.0	2.03e-23	Tail tube protein	N/A
eggNOG-mapper	UHGV-1411961_21	557598.LHK_01545	77.0	0.00000000000000925	N/A	N/A
structural_annotation	UHGV-1411961_21	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_22	phrog_427	62.8	4.8e-18	N/A	unknown function
structural_annotation	UHGV-1411961_22	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_23	phrog_212	206.5	0	major head protein	head and packaging
UniRef90	UHGV-1411961_23	UniRef90_A0A6J5KPX9	217.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1411961_23	568816.Acin_1831	351.0	0	N/A	N/A
Pfam	UHGV-1411961_23	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1411961_23	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_24	phrog_458	151.6	5.60519e-45	protease	other
eggNOG-mapper	UHGV-1411961_24	568816.Acin_1832	100.0	2.43e-23	N/A	N/A
PHROG	UHGV-1411961_25	phrog_528	105.3	1.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-1411961_25	1401067.HMPREF0872_06805	93.2	6.81e-23	N/A	N/A
PHROG	UHGV-1411961_26	phrog_332	437.8	0	head-tail adaptor	connector
UniRef90	UHGV-1411961_26	UniRef90_UPI001F3F9DD9	542.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1411961_26	568816.Acin_1834	597.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1411961_26	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1411961_26	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1411961_28	K06909	88.0	1.1e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1411961_28	phrog_2	159.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1411961_28	UniRef90_UPI001D00EC11	402.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1411961_28	585503.HMPREF7545_1731	415.0	0	Terminase-like family	N/A
Pfam	UHGV-1411961_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1411961_28	COG5323	N/A	N/A	Phage large terminase packaging protein	N/A
UniRef90	UHGV-1411961_30	UniRef90_UPI00103300F2	62.0	0.0000000000641	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1411961_30	1408437.JNJN01000040_gene204	50.8	0.000000381	N/A	N/A
structural_annotation	UHGV-1411961_30	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1411961_31	PF13983	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_33	phrog_15863	281.4	0	N/A	unknown function
UniRef90	UHGV-1411961_33	UniRef90_R6WLL6	590.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-1411961_33	693746.OBV_01780	127.0	2.79e-33	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1411961_33	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-1411961_38	K03111	55.6	0.0000000000000014	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1411961_38	phrog_44	59.4	9.9e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1411961_38	UniRef90_R6WGR4	254.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1411961_38	546268.NEISUBOT_05135	67.0	0.00000000000196	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1411961_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1411961_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1411961_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1411961_38	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1411961_39	K01160	59.4	9.6e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1411961_39	phrog_140	133.8	8.7e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1411961_39	UniRef90_A0A316S9J1	147.0	1.07059e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1411961_39	743719.PaelaDRAFT_5642	125.0	3.12e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1411961_39	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1411961_39	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1411961_39	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1411961_41	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_45	phrog_1384	113.7	1.4e-33	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-1411961_45	742741.HMPREF9475_03952	166.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-1411961_45	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
UniRef90	UHGV-1411961_46	UniRef90_A0A6N7WVF3	66.6	0.0000000000254	Restriction endonuclease subunit S	N/A
PHROG	UHGV-1411961_48	phrog_9298	400.0	0	radical SAM domain protein	other
UniRef90	UHGV-1411961_48	UniRef90_A0A348YZK3	409.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-1411961_48	755731.Clo1100_1144	360.0	0	N/A	N/A
COG	UHGV-1411961_48	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1411961_48	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_51	phrog_5968	151.5	4.2039e-45	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1411961_51	UniRef90_R6WTP4	192.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-1411961_51	1211817.CCAT010000007_gene1058	130.0	3.93e-33	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1411961_51	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1411961_51	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1411961_51	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1411961_51	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-1411961_53	K07455	202.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1411961_53	phrog_148	211.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1411961_53	UniRef90_R6XVK6	359.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-1411961_53	525257.HMPREF0204_11404	204.0	0	RecT family	N/A
Pfam	UHGV-1411961_53	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1411961_53	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1411961_53	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1411961_53	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1411961_54	K22299	40.5	0.000000000056	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-1411961_54	UniRef90_R6WLK2	133.0	3.79e-39	Conserved domain protein	N/A
Pfam	UHGV-1411961_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1411961_54	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1411961_54	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_55	phrog_434	335.8	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1411961_55	UniRef90_R6WGP6	617.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1411961_55	706434.HMPREF9429_00551	362.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-1411961_55	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1411961_55	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1411961_55	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1411961_55	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_57	phrog_14367	70.3	1.3e-20	N/A	unknown function
UniRef90	UHGV-1411961_57	UniRef90_R6WTN1	212.0	0	Peptidoglycan-binding LysM	N/A
Pfam	UHGV-1411961_57	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1411961_57	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1411961_57	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1411961_58	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-1411961_59	phrog_6058	73.0	2.4e-21	N/A	unknown function
UniRef90	UHGV-1411961_59	UniRef90_A0A0U9H7T0	57.4	0.00000000238	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-1411961_59	1280689.AUJC01000011_gene1497	67.0	0.0000000000000715	N/A	N/A
structural_annotation	UHGV-1411961_59	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-1411961_63	K18830	49.2	0.00000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-1411961_63	UniRef90_R6X1Y8	179.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1411961_63	641107.CDLVIII_1309	87.4	1.32e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1411961_63	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1411961_63	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1411961_63	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A