UHGV-1412302 (vOTU-008300)

Viral Genome: UHGV-1412302

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1412302
vOTU ID	vOTU-008300
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0238844
Associated BioSample	SAMN00715274
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9764
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.23
Jumbo phage	No

Genome content
Genome length (bp)	35,055
GC content	60.63%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	91%
Average CDS length (bps)	678.77
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1412302_1	K06400	46.6	0.00000000000043	spoIVCA; site-specific DNA recombinase	N/A
UniRef90	UHGV-1412302_1	UniRef90_A0A1C5UWP9	337.0	0	Zn_ribbon_recom domain-containing protein	N/A
eggNOG-mapper	UHGV-1412302_1	411483.FAEPRAA2165_00385	339.0	0	N/A	N/A
COG	UHGV-1412302_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
PHROG	UHGV-1412302_2	phrog_263	75.8	3.6e-22	holin	lysis
UniRef90	UHGV-1412302_2	UniRef90_D4K430	151.0	0	Holin, SPP1 family	N/A
eggNOG-mapper	UHGV-1412302_2	718252.FP2_06470	151.0	0	SPP1 phage holin	N/A
Pfam	UHGV-1412302_2	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-1412302_2	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-1412302_2	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_3	phrog_4105	86.9	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1412302_3	718252.FP2_06480	197.0	0	N/A	N/A
KOfam	UHGV-1412302_4	K08640	94.8	1.5e-27	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1412302_4	phrog_894	102.1	6.2e-30	endolysin	lysis
UniRef90	UHGV-1412302_4	UniRef90_A0A3E2U540	250.0	0	N/A	N/A
eggNOG-mapper	UHGV-1412302_4	718252.FP2_05470	254.0	0	Peptidase M15A	N/A
Pfam	UHGV-1412302_4	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1412302_4	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1412302_4	PF05951,COG3108	N/A	N/A	N/A	N/A
KOfam	UHGV-1412302_5	K07473	74.9	1.6e-21	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-1412302_5	phrog_2737	52.9	0.0000000000000021	N/A	unknown function
UniRef90	UHGV-1412302_5	UniRef90_A0A2A7BEI9	158.0	0	Type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
eggNOG-mapper	UHGV-1412302_5	718252.FP2_06500	167.0	0	Addiction module antitoxin, RelB DinJ family	N/A
Pfam	UHGV-1412302_5	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-1412302_5	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-1412302_5	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-1412302_5	PF04221,TIGR02384,COG3077	N/A	N/A	N/A	N/A
KOfam	UHGV-1412302_6	K19158	128.6	3.1e-38	yoeB; toxin YoeB [EC:3.1.-.-]	N/A
PHROG	UHGV-1412302_6	phrog_1213	50.7	0.000000000000035	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1412302_6	UniRef90_A0A564SVN3	186.0	0	Putative mRNA interferase YoeB	N/A
eggNOG-mapper	UHGV-1412302_6	718252.FP2_06510	186.0	0	YoeB-like toxin of bacterial type II toxin-antitoxin system	N/A
Pfam	UHGV-1412302_6	PF06769	N/A	N/A	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
NCBIFam	UHGV-1412302_6	TIGR02116.1	N/A	N/A	Txe/YoeB family addiction module toxin	N/A
COG	UHGV-1412302_6	COG4115	N/A	N/A	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	N/A
structural_annotation	UHGV-1412302_6	PF06769,TIGR02116,COG4115	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_9	phrog_9534	250.1	0	head protein	head and packaging
eggNOG-mapper	UHGV-1412302_9	748224.HMPREF9436_03323	197.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1412302_9	PF21567	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_10	phrog_538	173.5	0	minor tail protein	tail
UniRef90	UHGV-1412302_10	UniRef90_UPI0011064D4D	95.1	2.14e-18	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1412302_10	748224.HMPREF9436_03324	449.0	0	N/A	N/A
Pfam	UHGV-1412302_10	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1412302_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_11	phrog_36410	68.5	7.7e-20	N/A	unknown function
UniRef90	UHGV-1412302_11	UniRef90_UPI00130E98E0	534.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1412302_11	748224.HMPREF9436_03325	296.0	0	Phage tail protein	N/A
structural_annotation	UHGV-1412302_11	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_12	phrog_28775	806.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1412302_12	UniRef90_UPI00030AC5DB	1037.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1412302_12	748224.HMPREF9436_03326	233.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1412302_12	PF20155	N/A	N/A	Tape measure protein	TMP_3
COG	UHGV-1412302_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1412302_12	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_13	phrog_706	103.3	2.2e-30	N/A	unknown function
UniRef90	UHGV-1412302_13	UniRef90_D4K437	389.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1412302_13	718252.FP2_06590	389.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1412302_13	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1412302_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_14	phrog_4450	113.9	1.1e-33	N/A	unknown function
structural_annotation	UHGV-1412302_14	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_15	phrog_820	85.6	4.8e-25	major tail protein	tail
eggNOG-mapper	UHGV-1412302_15	718252.FP2_06610	325.0	0	N/A	N/A
structural_annotation	UHGV-1412302_15	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_16	phrog_3266	130.3	7.5e-39	tail completion	connector
eggNOG-mapper	UHGV-1412302_16	718252.FP2_06620	281.0	0	N/A	N/A
structural_annotation	UHGV-1412302_16	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_17	phrog_556	88.0	7.2e-26	minor head protein	head and packaging
UniRef90	UHGV-1412302_17	UniRef90_D4K441	267.0	0	Minor capsid	N/A
eggNOG-mapper	UHGV-1412302_17	718252.FP2_06630	267.0	0	Minor capsid protein	N/A
Pfam	UHGV-1412302_17	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1412302_17	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_18	phrog_3366	80.2	2.6e-23	N/A	unknown function
structural_annotation	UHGV-1412302_18	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_19	phrog_541	75.4	6.7e-22	head-tail adaptor	connector
PHROG	UHGV-1412302_20	phrog_267	81.4	1e-23	major head protein	head and packaging
UniRef90	UHGV-1412302_20	UniRef90_A0A0D8J2H9	360.0	0	p22 coat protein 5	N/A
eggNOG-mapper	UHGV-1412302_20	718252.FP2_06660	518.0	0	N/A	N/A
structural_annotation	UHGV-1412302_20	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_21	phrog_194	71.0	2e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-1412302_21	UniRef90_D4K444	345.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1412302_21	748224.HMPREF9436_03336	240.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1412302_21	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1412302_23	phrog_581	350.6	0	minor head protein	head and packaging
UniRef90	UHGV-1412302_23	UniRef90_D4K446	970.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1412302_23	718252.FP2_06690	970.0	0	N/A	N/A
Pfam	UHGV-1412302_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1412302_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1412302_23	PF06152,PF12106	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_24	phrog_533	269.9	0	portal protein	head and packaging
UniRef90	UHGV-1412302_24	UniRef90_A0A7G9WF85	365.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1412302_24	718252.FP2_06700	984.0	0	N/A	N/A
structural_annotation	UHGV-1412302_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1412302_25	K06909	83.8	2.6e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1412302_25	phrog_2	113.7	2.7e-33	terminase large subunit	head and packaging
UniRef90	UHGV-1412302_25	UniRef90_A0A844EGH8	758.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1412302_25	1449050.JNLE01000003_gene3895	397.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1412302_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1412302_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1412302_25	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_26	phrog_2412	77.7	1.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-1412302_26	742738.HMPREF9460_02504	122.0	2.95e-34	N/A	N/A
PHROG	UHGV-1412302_27	phrog_36	87.2	2e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-1412302_27	UniRef90_A0A3E2U224	130.0	3.4e-36	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1412302_27	748224.HMPREF9436_01463	116.0	1.63e-31	N/A	N/A
structural_annotation	UHGV-1412302_27	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-1412302_28	K01160	45.5	0.000000000002	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1412302_28	phrog_140	85.8	5.7e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412302_28	UniRef90_UPI00122CFAB3	284.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1412302_28	478749.BRYFOR_07588	148.0	2.52234e-44	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1412302_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1412302_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1412302_28	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1412302_29	K07505	371.2	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1412302_29	phrog_2597	1090.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412302_29	UniRef90_UPI00122CD8B8	1503.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1412302_29	552396.HMPREF0863_02435	865.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1412302_29	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1412302_29	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1412302_29	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1412302_29	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1412302_30	K17677	344.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1412302_30	phrog_16	269.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412302_30	UniRef90_UPI00122D00F7	1028.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1412302_30	610130.Closa_1369	734.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1412302_30	mREase_IV_00005	129.4	2.9e-38	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1412302_30	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1412302_30	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1412302_30	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1412302_30	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_31	phrog_2698	191.4	0	N/A	unknown function
UniRef90	UHGV-1412302_31	UniRef90_UPI00122C4984	328.0	0	N/A	N/A
eggNOG-mapper	UHGV-1412302_31	394503.Ccel_3308	134.0	3.88e-38	N/A	N/A
structural_annotation	UHGV-1412302_31	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1412302_32	phrog_124	218.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412302_32	UniRef90_UPI00122C2B12	704.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1412302_32	645991.Sgly_0321	366.0	0	AAA domain	N/A
Pfam	UHGV-1412302_32	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1412302_32	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1412302_33	K03546	58.0	1.2e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1412302_33	phrog_1499	467.6	0	N/A	unknown function
UniRef90	UHGV-1412302_33	UniRef90_UPI00122C2DDE	803.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1412302_33	1486428.A0A097BY67_9CAUD	490.0	0	N/A	N/A
Pfam	UHGV-1412302_33	PF13476	N/A	N/A	AAA domain	AAA_23
structural_annotation	UHGV-1412302_33	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1412302_34	665956.HMPREF1032_03597	189.0	0	DNA binding	N/A
COG	UHGV-1412302_34	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
UniRef90	UHGV-1412302_35	UniRef90_UPI001D0E65C2	183.0	0	N/A	N/A
Pfam	UHGV-1412302_35	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-1412302_35	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-1412302_38	UniRef90_A0A2A7BGV7	84.0	1.27e-19	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1412302_38	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1412302_38	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1412302_38	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1412302_40	718252.FP2_06840	60.5	0.000000000199	BRO family, N-terminal domain	N/A
COG	UHGV-1412302_40	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1412302_41	PF13601,MF_01819,TIGR03433,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-1412302_43	K22300	68.4	1.4e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1412302_43	phrog_8	58.6	4.8e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1412302_43	UniRef90_A0A564SVW9	242.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-1412302_43	748224.HMPREF9436_01444	162.0	0	N/A	N/A
Pfam	UHGV-1412302_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1412302_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1412302_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1412302_45	PF16900,NF040991	N/A	N/A	N/A	N/A
KOfam	UHGV-1412302_46	K14059	139.9	3.20001e-41	int; integrase	N/A
PHROG	UHGV-1412302_46	phrog_1	131.3	8.9e-39	integrase	integration and excision
UniRef90	UHGV-1412302_46	UniRef90_A0A564SUY5	717.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1412302_46	748224.HMPREF9436_03382	325.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1412302_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1412302_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1412302_46	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1412302_47	718252.FP2_30750	75.9	4.94e-18	N/A	N/A