UHGV-1412667 (vOTU-025052)

Viral Genome: UHGV-1412667

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1412667
vOTU ID	vOTU-025052
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0237523
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.4 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.13
Jumbo phage	No

Genome content
Genome length (bp)	34,809
GC content	47.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	88%
Average CDS length (bps)	666.46
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.4)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
NCBIFam	UHGV-1412667_4	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
COG	UHGV-1412667_4	COG0515	N/A	N/A	Serine/threonine protein kinase	N/A
structural_annotation	UHGV-1412667_4	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
UniRef90	UHGV-1412667_5	UniRef90_A0A417DZ16	52.4	0.000000241	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1412667_5	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1412667_6	K14060	95.1	8.5e-28	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1412667_6	phrog_125	129.5	2.2e-38	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412667_6	UniRef90_UPI001A9B5A42	246.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1412667_6	1443122.Z958_05795	159.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1412667_6	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1412667_6	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1412667_6	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1412667_7	NF009949	N/A	N/A	N/A	N/A
KOfam	UHGV-1412667_8	K14415	327.3	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1412667_8	phrog_1075	439.6	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412667_8	UniRef90_UPI00067F3ABF	476.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-1412667_8	1211844.CBLM010000044_gene358	469.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1412667_8	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1412667_8	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1412667_8	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-1412667_9	phrog_38	178.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1412667_9	UniRef90_UPI000419A6BC	428.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1412667_9	1121866.AUGK01000003_gene1428	428.0	0	chromosome segregation	N/A
COG	UHGV-1412667_9	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1412667_9	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1412667_11	phrog_64	150.4	8.40779e-45	portal protein	head and packaging
UniRef90	UHGV-1412667_11	UniRef90_A0A371ILT4	335.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1412667_11	1121866.AUGK01000003_gene1429	278.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1412667_11	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1412667_11	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1412667_12	phrog_2657	202.9	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1412667_12	UniRef90_A0A7X5DZ93	319.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1412667_12	411490.ANACAC_00702	310.0	0	phage regulatory protein, rha family	N/A
Pfam	UHGV-1412667_12	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1412667_12	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1412667_12	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1412667_12	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-1412667_15	phrog_29	181.0	0	major head protein	head and packaging
UniRef90	UHGV-1412667_15	UniRef90_A0A2Z4QBB4	375.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1412667_15	1347368.HG964404_gene4993	264.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1412667_15	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1412667_15	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1412667_16	UniRef90_A0A7C7ERG0	82.4	5.53e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-1412667_16	PF05135	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1412667_17	1298920.KI911353_gene2656	53.1	0.000000439	N/A	N/A
structural_annotation	UHGV-1412667_17	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1412667_19	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1412667_20	phrog_158	41.7	0.000000000017	major tail protein	tail
UniRef90	UHGV-1412667_20	UniRef90_UPI001D06C8CA	88.6	9.57e-20	phage tail protein	N/A
structural_annotation	UHGV-1412667_20	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
Pfam	UHGV-1412667_21	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1412667_21	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1412667_22	1121333.JMLH01000047_gene1011	80.1	2.55e-17	N/A	N/A
PHROG	UHGV-1412667_23	phrog_1535	189.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1412667_23	1121866.AUGK01000003_gene1437	234.0	0	phage tail tape measure protein	N/A
COG	UHGV-1412667_23	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1412667_24	phrog_1194	103.2	1.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1412667_24	1121866.AUGK01000003_gene1438	97.4	2e-24	N/A	N/A
Pfam	UHGV-1412667_24	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1412667_24	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-1412667_25	phrog_6616	212.0	0	tail protein	tail
eggNOG-mapper	UHGV-1412667_25	445971.ANASTE_00088	123.0	1.27e-26	N/A	N/A
structural_annotation	UHGV-1412667_25	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
COG	UHGV-1412667_27	COG0613	N/A	N/A	5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain	N/A
KOfam	UHGV-1412667_28	K07273	172.8	0	acm; lysozyme	N/A
PHROG	UHGV-1412667_28	phrog_291	137.1	1.4e-40	endolysin	lysis
UniRef90	UHGV-1412667_28	UniRef90_UPI001D0EE7D8	308.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1412667_28	748224.HMPREF9436_00154	302.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1412667_28	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1412667_28	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1412667_28	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1412667_29	phrog_1863	70.9	9.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1412667_29	718252.FP2_04900	142.0	2.11596e-43	N/A	N/A
PHROG	UHGV-1412667_30	phrog_15303	90.4	1.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-1412667_34	1408437.JNJN01000043_gene803	64.3	0.0000000000561	N/A	N/A
eggNOG-mapper	UHGV-1412667_35	1378168.N510_03079	95.9	3.28e-21	N/A	N/A
eggNOG-mapper	UHGV-1412667_36	1415774.U728_1699	120.0	5.29e-33	N/A	N/A
PHROG	UHGV-1412667_37	phrog_7070	114.3	2.8e-34	N/A	unknown function
eggNOG-mapper	UHGV-1412667_37	1195072.M4HPW0_9CAUD	94.4	1.89e-23	N/A	N/A
PHROG	UHGV-1412667_39	phrog_130	142.2	3.20057e-42	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1412667_39	UniRef90_UPI00096AC6A5	140.0	6.8e-37	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1412667_39	1160721.RBI_I00267	159.0	1.12104e-44	BRO family, N-terminal domain	N/A
Pfam	UHGV-1412667_39	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1412667_39	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1412667_39	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1412667_40	phrog_3896	69.6	2.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-1412667_40	397290.C810_01338	67.8	0.0000000000000349	N/A	N/A
structural_annotation	UHGV-1412667_41	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-1412667_43	K03496	236.6	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1412667_43	phrog_164	161.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412667_43	UniRef90_A0A1C6BS15	214.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1412667_43	1392502.JNIO01000004_gene6	192.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1412667_43	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1412667_43	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1412667_43	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1412667_44	phrog_4402	110.6	1.2e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412667_44	UniRef90_A0A0H5Q331	268.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1412667_44	999413.HMPREF1094_04438	145.0	9.86e-38	Initiator Replication protein	N/A
Pfam	UHGV-1412667_44	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1412667_44	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1412667_44	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1412667_44	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A