UHGV-1412717 (vOTU-079550)

Viral Genome: UHGV-1412717

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1412717
vOTU ID	vOTU-079550
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0107922
Associated BioSample	SAMN02333952
Viral genome confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9788
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.73
Jumbo phage	No

Genome content
Genome length (bp)	16,232
GC content	30.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	20
CDS density	92%
Average CDS length (bps)	742.65
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1412717_6	PF17548	N/A	N/A	N/A	N/A
KOfam	UHGV-1412717_7	K03111	111.5	1.1e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1412717_7	phrog_44	133.2	1.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412717_7	UniRef90_A0A3R6NKD5	115.0	1.01e-30	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1412717_7	1298920.KI911353_gene4869	116.0	9.17e-32	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1412717_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1412717_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1412717_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1412717_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1412717_7	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1412717_9	K21237	388.8	0	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	N/A
PHROG	UHGV-1412717_9	phrog_1907	399.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1412717_9	UniRef90_A0A843GSA4	796.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1412717_9	10756.DPOL_BPPH2	196.0	0	DNA polymerase type B, organellar and viral	N/A
Pfam	UHGV-1412717_9	PF03175	N/A	N/A	DNA polymerase type B, organellar and viral	DNA_pol_B_2
structural_annotation	UHGV-1412717_9	PF03175,MF_04055,NF004415,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-1412717_10	phrog_2150	179.7	0	terminase	head and packaging
UniRef90	UHGV-1412717_10	UniRef90_A0A843GUV2	523.0	0	Phage DNA encapsidation protein	N/A
eggNOG-mapper	UHGV-1412717_10	338473.A6XAE1_9CAUD	80.1	0.0000000000000513	Podovirus DNA encapsidation protein (Gp16)	N/A
Pfam	UHGV-1412717_10	PF05894	N/A	N/A	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
structural_annotation	UHGV-1412717_10	PF05894,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1412717_12	phrog_21357	42.9	0.0000000000054	endolysin	lysis
Pfam	UHGV-1412717_12	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1412717_12	COG3942	N/A	N/A	Surface antigen	N/A
PHROG	UHGV-1412717_14	phrog_2006	307.2	0	major head protein	head and packaging
UniRef90	UHGV-1412717_14	UniRef90_A0A843HQR2	478.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1412717_14	10753.B7SSM8_BPNF	229.0	0	viral capsid	N/A
structural_annotation	UHGV-1412717_14	PF19821,PF02368,MF_04119,NF033394,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-1412717_15	phrog_2248	161.9	0	tail protein	tail
UniRef90	UHGV-1412717_15	UniRef90_A0A843GZQ7	283.0	0	Caud_tail_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1412717_15	1128071.G9J3I0_9CAUD	90.9	8.51e-17	N/A	N/A
Pfam	UHGV-1412717_15	PF16838	N/A	N/A	Caudoviral major tail protein N-terminus	Caud_tail_N
Pfam	UHGV-1412717_15	PF20934	N/A	N/A	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
structural_annotation	UHGV-1412717_15	PF20934,PF16838	N/A	N/A	N/A	N/A
PHROG	UHGV-1412717_16	phrog_2038	206.0	0	upper collar connector	connector
UniRef90	UHGV-1412717_16	UniRef90_Q37891	156.0	2.40042e-42	Portal protein	N/A
eggNOG-mapper	UHGV-1412717_16	10753.B7SSN1_BPNF	157.0	2.85865e-43	Phage Connector (GP10)	N/A
Pfam	UHGV-1412717_16	PF05352	N/A	N/A	Phage Connector (GP10)	Phage_connector
structural_annotation	UHGV-1412717_16	PF05352,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1412717_17	phrog_3225	109.8	1.3e-36	adaptor Ad4	connector
UniRef90	UHGV-1412717_17	UniRef90_A0A7T7ZAL4	70.1	0.000000000643	Lower collar protein	N/A
eggNOG-mapper	UHGV-1412717_17	10753.B7SSN2_BPNF	87.0	1.83e-16	N/A	N/A
eggNOG-mapper	UHGV-1412717_18	1268068.PG5_25610	70.9	0.000000000487	COG2931 RTX toxins and related Ca2 -binding proteins	N/A
Pfam	UHGV-1412717_18	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-1412717_18	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
structural_annotation	UHGV-1412717_18	PF12708,TIGR03808,COG5434	N/A	N/A	N/A	N/A
PHROG	UHGV-1412717_19	phrog_5207	48.4	0.000000000000075	N/A	unknown function
eggNOG-mapper	UHGV-1412717_19	1202532.FF52_00210	105.0	2.72e-24	exo-alpha-(2->6)-sialidase activity	N/A
COG	UHGV-1412717_19	COG4409	N/A	N/A	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	N/A
PHROG	UHGV-1412717_20	phrog_2234	62.5	5.7e-18	tail spike protein	tail
eggNOG-mapper	UHGV-1412717_20	925984.E5AGC7_9CAUD	58.2	0.00000551	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1412717_20	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
Pfam	UHGV-1412717_20	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix