UHGV-1415063 (vOTU-034624)

Viral Genome: UHGV-1415063

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1415063
vOTU ID	vOTU-034624
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0238605
Associated BioSample	SAMEA2338810
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.8 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.43
Jumbo phage	No

Genome content
Genome length (bp)	35,015
GC content	38.82%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	94%
Average CDS length (bps)	608.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1415063_1	658655.HMPREF0988_00918	67.0	0.0000000000000667	N/A	N/A
PHROG	UHGV-1415063_2	phrog_21718	57.7	1.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-1415063_2	658655.HMPREF0988_00919	119.0	1.69e-31	N/A	N/A
structural_annotation	UHGV-1415063_2	NF033819	N/A	N/A	N/A	N/A
KOfam	UHGV-1415063_4	K14059	260.3	0	int; integrase	N/A
PHROG	UHGV-1415063_4	phrog_1	209.9	0	integrase	integration and excision
UniRef90	UHGV-1415063_4	UniRef90_A0A412RQS9	564.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1415063_4	1235799.C818_02711	378.0	0	Phage integrase family	N/A
Pfam	UHGV-1415063_4	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-1415063_4	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1415063_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1415063_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1415063_4	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_5	phrog_16129	54.5	8.2e-16	excisionase	integration and excision
UniRef90	UHGV-1415063_5	UniRef90_A0A412RR26	172.0	0	HTH luxR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1415063_5	658088.HMPREF0987_01415	75.9	1.56e-16	Excisionase from transposon Tn916	N/A
Pfam	UHGV-1415063_5	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
Pfam	UHGV-1415063_5	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
structural_annotation	UHGV-1415063_5	PF09035,PF00196,MF_00674,NF033787,NF008895,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-1415063_7	UniRef90_A0A143XK80	69.7	0.0000000000282	DZANK-type domain-containing protein	N/A
Pfam	UHGV-1415063_7	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
PHROG	UHGV-1415063_8	phrog_9804	164.1	0	N/A	unknown function
UniRef90	UHGV-1415063_8	UniRef90_A0A292SPH8	286.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1415063_8	1410650.JHWL01000003_gene2847	143.0	1.49e-40	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1415063_8	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1415063_8	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_9	phrog_6251	155.6	0	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1415063_9	UniRef90_A0A2W1LTU7	187.0	0	Replication protein	N/A
eggNOG-mapper	UHGV-1415063_9	1444310.JANV01000162_gene1206	167.0	0	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1415063_9	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1415063_9	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1415063_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1415063_9	PF09524,PF04492,TIGR02220,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_11	phrog_17284	66.1	3.5e-19	N/A	unknown function
UniRef90	UHGV-1415063_11	UniRef90_A0A8D9UIK6	304.0	0	Cytosine specific methyltransferase	N/A
eggNOG-mapper	UHGV-1415063_11	482234.SCAZ3_10455	90.1	1.81e-18	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1415063_11	oMTase_00023	75.0	1.4e-21	orphan methyltransferase	RM
Pfam	UHGV-1415063_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1415063_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1415063_14	K00558	71.9	6.3e-21	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1415063_14	phrog_116	73.9	1.7e-21	DNA methyltransferase	other
UniRef90	UHGV-1415063_14	UniRef90_A0A843GJX4	187.0	0	DNA (Cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1415063_14	397290.C810_05213	175.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1415063_14	MTase_II_00174	91.6	1.6e-26	Type II methyltransferase	RM
Pfam	UHGV-1415063_14	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1415063_14	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1415063_14	PF00145	N/A	N/A	N/A	N/A
UniRef90	UHGV-1415063_15	UniRef90_A0A413UEY2	110.0	3.49e-29	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1415063_15	397290.C810_05213	121.0	1.83e-31	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-1415063_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1415063_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1415063_16	phrog_6724	61.3	2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1415063_16	1463936.JOJI01000043_gene7935	48.9	0.0000029	N/A	N/A
eggNOG-mapper	UHGV-1415063_17	397290.C810_01505	79.7	4.91e-19	N/A	N/A
PHROG	UHGV-1415063_18	phrog_19106	335.5	0	N/A	unknown function
UniRef90	UHGV-1415063_18	UniRef90_R7BHG7	303.0	0	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-1415063_18	658655.HMPREF0988_00875	275.0	0	N/A	N/A
Pfam	UHGV-1415063_18	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-1415063_18	TIGR01453	N/A	N/A	N/A	N/A
UniRef90	UHGV-1415063_19	UniRef90_R7BIL7	87.0	1.19e-19	Putative DNA topoisomerase I	N/A
KOfam	UHGV-1415063_20	K03111	110.9	1.8e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1415063_20	phrog_44	120.3	1.6e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1415063_20	UniRef90_A0A412RR48	271.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1415063_20	397290.C810_01495	196.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1415063_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1415063_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1415063_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1415063_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1415063_20	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-1415063_21	UniRef90_UPI001D005DC4	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-1415063_21	1408423.JHYA01000024_gene1215	77.8	7.17e-17	N/A	N/A
Pfam	UHGV-1415063_21	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-1415063_21	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1415063_21	PF07866,COG4728	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_22	phrog_98	78.6	7.1e-23	N/A	unknown function
UniRef90	UHGV-1415063_22	UniRef90_A0A3E4YM29	151.0	4.2039e-45	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1415063_22	1121097.JCM15093_2710	77.4	1.53e-16	YopX protein	N/A
Pfam	UHGV-1415063_22	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1415063_22	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
COG	UHGV-1415063_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1415063_26	phrog_392	185.5	0	metal-dependent hydrolase	other
UniRef90	UHGV-1415063_26	UniRef90_A0A412RQX2	377.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1415063_26	1443122.Z958_05735	162.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1415063_26	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-1415063_26	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-1415063_26	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1415063_26	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_27	phrog_25456	153.7	0	N/A	unknown function
PHROG	UHGV-1415063_28	phrog_8684	98.5	3.1e-29	N/A	unknown function
UniRef90	UHGV-1415063_28	UniRef90_A0A416AFR1	103.0	1.64e-25	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1415063_28	742733.HMPREF9469_00912	76.6	5.44e-16	YopX protein	N/A
Pfam	UHGV-1415063_28	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1415063_28	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1415063_28	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_29	phrog_2185	293.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1415063_29	UniRef90_UPI001BC46C39	489.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1415063_29	658655.HMPREF0988_00886	374.0	0	N/A	N/A
Pfam	UHGV-1415063_29	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1415063_29	NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1415063_30	K00986	146.8	1.79366e-43	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1415063_30	phrog_1423	279.6	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1415063_30	UniRef90_F7JKD0	510.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1415063_30	658655.HMPREF0988_00871	510.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1415063_30	icity0040	99.5	5.6e-29	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1415063_30	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1415063_30	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1415063_30	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_31	phrog_3206	78.8	5e-23	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1415063_31	UniRef90_A0A4Q5C8K1	208.0	0	Four helix bundle protein	N/A
eggNOG-mapper	UHGV-1415063_31	658655.HMPREF0988_00872	203.0	0	N/A	N/A
Pfam	UHGV-1415063_31	PF05635	N/A	N/A	23S rRNA-intervening sequence protein	23S_rRNA_IVP
structural_annotation	UHGV-1415063_31	PF05635,NF033474,COG3308	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_32	phrog_9958	168.8	0	N/A	unknown function
UniRef90	UHGV-1415063_32	UniRef90_F7JKD2	195.0	0	N/A	N/A
eggNOG-mapper	UHGV-1415063_32	658655.HMPREF0988_00873	195.0	0	N/A	N/A
Pfam	UHGV-1415063_32	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1415063_32	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_33	phrog_9958	96.5	2.2e-28	N/A	unknown function
UniRef90	UHGV-1415063_33	UniRef90_R5KQI2	118.0	3.48e-30	N/A	N/A
eggNOG-mapper	UHGV-1415063_33	658655.HMPREF0988_00874	170.0	0	N/A	N/A
structural_annotation	UHGV-1415063_33	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-1415063_35	K19171	105.2	6.2e-31	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1415063_35	phrog_77	169.2	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1415063_35	UniRef90_A0A8D9PGW5	829.0	0	Chromosome partition protein	N/A
eggNOG-mapper	UHGV-1415063_35	1298920.KI911353_gene2731	295.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1415063_35	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1415063_35	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1415063_35	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_37	phrog_26861	95.0	1.7e-29	N/A	unknown function
UniRef90	UHGV-1415063_37	UniRef90_R6WZ78	169.0	0	Single-strand binding protein/Primosomal replication protein n	N/A
eggNOG-mapper	UHGV-1415063_37	397290.C810_01452	167.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1415063_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1415063_37	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1415063_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1415063_37	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1415063_38	1408324.JNJK01000014_gene1984	127.0	1.05e-35	N/A	N/A
PHROG	UHGV-1415063_39	phrog_4292	72.9	2.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1415063_39	411460.RUMTOR_01375	79.3	3.77e-19	N/A	N/A
PHROG	UHGV-1415063_40	phrog_463	217.1	0	anti-repressor	transcription regulation
UniRef90	UHGV-1415063_40	UniRef90_A0A412RQX1	325.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-1415063_40	1449343.JQLQ01000002_gene1556	167.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1415063_40	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1415063_40	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1415063_40	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1415063_40	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1415063_41	PF19962,TIGR04535	N/A	N/A	N/A	N/A
KOfam	UHGV-1415063_45	K18830	66.1	3.6e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1415063_45	phrog_8	52.4	0.0000000000000058	transcriptional regulator	transcription regulation
UniRef90	UHGV-1415063_45	UniRef90_A0A3R6UL37	160.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1415063_45	445972.ANACOL_03315	125.0	1.27e-35	N/A	N/A
Pfam	UHGV-1415063_45	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1415063_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1415063_45	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_47	phrog_5319	75.2	6.1e-22	outer membrane protein	other
UniRef90	UHGV-1415063_47	UniRef90_A0A4Y8L4M3	77.4	0.0000000000000142	Toxin regulator	N/A
eggNOG-mapper	UHGV-1415063_47	1235755.ANAM01000010_gene1790	81.3	2.24e-16	N/A	N/A
structural_annotation	UHGV-1415063_47	PF03843,MF_01959,TIGR00752,COG3065	N/A	N/A	N/A	N/A
KOfam	UHGV-1415063_48	K07273	178.3	0	acm; lysozyme	N/A
PHROG	UHGV-1415063_48	phrog_291	153.9	1.4013e-45	endolysin	lysis
UniRef90	UHGV-1415063_48	UniRef90_A0A415MEE0	330.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1415063_48	515620.EUBELI_01316	219.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-1415063_48	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1415063_48	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1415063_48	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_49	phrog_17196	154.1	0	kinase	other
UniRef90	UHGV-1415063_49	UniRef90_A0A3R6GQJ1	384.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1415063_49	1235790.C805_00090	219.0	0	N/A	N/A
Pfam	UHGV-1415063_49	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-1415063_50	phrog_18190	664.4	0	N/A	unknown function
UniRef90	UHGV-1415063_50	UniRef90_A0A413Z640	564.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1415063_50	1235790.C805_00089	431.0	0	N/A	N/A
structural_annotation	UHGV-1415063_50	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_51	phrog_1194	57.1	2.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1415063_51	483218.BACPEC_01144	68.2	0.00000000000101	N/A	N/A
Pfam	UHGV-1415063_51	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1415063_51	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1415063_52	phrog_1535	147.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1415063_52	UniRef90_A0A1C5WKI4	651.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1415063_52	1298920.KI911353_gene2649	223.0	0	tape measure	N/A
COG	UHGV-1415063_52	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1415063_54	phrog_36112	59.7	2.3e-17	N/A	unknown function
UniRef90	UHGV-1415063_54	UniRef90_A0A8D9PG71	123.0	8.12e-33	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-1415063_54	1298920.KI911353_gene2651	130.0	2.83e-36	N/A	N/A