UHGV-1422729 (vOTU-008855)

Viral Genome: UHGV-1422729

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1422729
vOTU ID	vOTU-008855
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0243740
Associated BioSample	SAMN00991536
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.8 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9687
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.87
Jumbo phage	No

Genome content
Genome length (bp)	35,759
GC content	41.56%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	94%
Average CDS length (bps)	637.19
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1422729_1	K14059	197.7	0	int; integrase	N/A
PHROG	UHGV-1422729_1	phrog_1	176.8	0	integrase	integration and excision
UniRef90	UHGV-1422729_1	UniRef90_UPI001EDF2E8E	780.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1422729_1	908340.HMPREF9406_2610	915.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1422729_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1422729_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-1422729_4	K18830	54.8	0.000000000000002	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1422729_4	phrog_2967	46.6	0.00000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1422729_4	UniRef90_R6VV25	248.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1422729_4	908340.HMPREF9406_2608	174.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1422729_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1422729_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1422729_4	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1422729_5	K22300	58.1	2.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1422729_5	phrog_8	46.5	0.00000000000066	transcriptional regulator	transcription regulation
UniRef90	UHGV-1422729_5	UniRef90_R6V1F0	251.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1422729_5	999413.HMPREF1094_02044	157.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1422729_5	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1422729_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1422729_5	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_13	phrog_22529	52.8	0.0000000000000053	N/A	unknown function
UniRef90	UHGV-1422729_13	UniRef90_R6UK06	157.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1422729_13	411462.DORLON_01869	62.8	0.000000000171	3D domain	N/A
Pfam	UHGV-1422729_13	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1422729_13	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1422729_13	PF06725,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_15	phrog_3584	271.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1422729_15	UniRef90_A0A4P8IFK4	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-1422729_15	908340.HMPREF9406_2599	485.0	0	N/A	N/A
structural_annotation	UHGV-1422729_15	PF21578	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1422729_17	PF02768,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
KOfam	UHGV-1422729_19	K03148	84.3	1.3e-24	thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]	N/A
UniRef90	UHGV-1422729_19	UniRef90_R6VV12	457.0	0	ThiF domain-containing protein	N/A
eggNOG-mapper	UHGV-1422729_19	428127.EUBDOL_01242	286.0	0	ThiF family	N/A
Pfam	UHGV-1422729_19	PF00899	N/A	N/A	ThiF family	ThiF
COG	UHGV-1422729_19	COG0476	N/A	N/A	Molybdopterin or thiamine biosynthesis adenylyltransferase	N/A
structural_annotation	UHGV-1422729_19	PF00899,MF_03049,TIGR03736,COG0476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1422729_21	UniRef90_A0A318KPZ6	153.0	2.60642e-43	E2/UBC family protein D	N/A
Pfam	UHGV-1422729_21	PF14460	N/A	N/A	Prokaryotic E2 family D	Prok-E2_D
structural_annotation	UHGV-1422729_21	PF14460,TIGR03737	N/A	N/A	N/A	N/A
KOfam	UHGV-1422729_22	K00571	89.9	2.5e-26	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1422729_22	phrog_16	219.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1422729_22	UniRef90_R6UVL5	1714.0	0	DNA methylase family protein	N/A
eggNOG-mapper	UHGV-1422729_22	1298920.KI911353_gene2709	1234.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1422729_22	MTase_II_00085	45.7	8e-17	Type II methyltransferase	RM
Pfam	UHGV-1422729_22	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1422729_22	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1422729_22	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1422729_22	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_23	phrog_20730	100.4	6.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-1422729_23	1211817.CCAT010000053_gene2117	91.3	1.67e-20	N/A	N/A
KOfam	UHGV-1422729_24	K04763	95.7	4.6e-28	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1422729_24	phrog_216	136.2	1.7e-40	integrase	integration and excision
UniRef90	UHGV-1422729_24	UniRef90_G1VXJ6	437.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1422729_24	1232446.BAIE02000002_gene805	186.0	0	Integrase	N/A
Pfam	UHGV-1422729_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1422729_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1422729_24	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1422729_25	UniRef90_G1VXJ7	155.0	0	N/A	N/A
Pfam	UHGV-1422729_25	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-1422729_30	UniRef90_A0A6N2XDS2	92.8	9.42e-23	Sigma-70, region 4	N/A
PHROG	UHGV-1422729_31	phrog_119	50.8	0.000000000000021	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1422729_31	UniRef90_A0A414B846	159.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1422729_31	999413.HMPREF1094_02014	204.0	0	HNH nucleases	N/A
COG	UHGV-1422729_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1422729_31	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_33	phrog_361	119.3	1.9e-35	terminase small subunit	head and packaging
UniRef90	UHGV-1422729_33	UniRef90_A0A1Y4FAU6	145.0	2.40042e-42	Terminase	N/A
eggNOG-mapper	UHGV-1422729_33	908340.HMPREF9406_2581	240.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1422729_33	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1422729_33	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_34	phrog_9	307.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1422729_34	UniRef90_G1VMM3	1071.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1422729_34	908340.HMPREF9406_2580	1088.0	0	Phage Terminase	N/A
Pfam	UHGV-1422729_34	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1422729_34	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1422729_34	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1422729_34	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_35	phrog_12	173.2	0	portal protein	head and packaging
UniRef90	UHGV-1422729_35	UniRef90_A0A099I918	793.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1422729_35	999413.HMPREF1094_02010	756.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1422729_35	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1422729_35	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1422729_35	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1422729_35	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1422729_36	K06904	144.7	8.00141e-43	N/A	N/A
PHROG	UHGV-1422729_36	phrog_80	180.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1422729_36	UniRef90_G1VMM5	357.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-1422729_36	908340.HMPREF9406_2578	360.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1422729_36	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1422729_36	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1422729_36	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1422729_36	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_37	phrog_10	205.7	0	major head protein	head and packaging
UniRef90	UHGV-1422729_37	UniRef90_N9WI02	1025.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-1422729_37	999413.HMPREF1094_02008	1025.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1422729_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1422729_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1422729_37	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1422729_37	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_38	phrog_2550	83.1	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-1422729_38	908340.HMPREF9406_2576	177.0	0	N/A	N/A
PHROG	UHGV-1422729_39	phrog_19734	176.8	0	N/A	unknown function
UniRef90	UHGV-1422729_39	UniRef90_A0A3E5GR03	100.0	3.95e-25	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1422729_39	908340.HMPREF9406_2575	241.0	0	N/A	N/A
structural_annotation	UHGV-1422729_39	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_40	phrog_78	44.4	0.0000000000031	tail terminator	connector
eggNOG-mapper	UHGV-1422729_40	908340.HMPREF9406_2574	213.0	0	N/A	N/A
structural_annotation	UHGV-1422729_40	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_41	phrog_5	51.3	0.00000000000002	tail completion or Neck1 protein	connector
UniRef90	UHGV-1422729_41	UniRef90_R6UNR2	316.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1422729_41	908340.HMPREF9406_2573	316.0	0	N/A	N/A
NCBIFam	UHGV-1422729_41	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1422729_41	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_42	phrog_88	108.8	4e-32	major tail protein	tail
UniRef90	UHGV-1422729_42	UniRef90_N9WHZ7	411.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-1422729_42	33035.JPJF01000039_gene278	201.0	0	N/A	N/A
NCBIFam	UHGV-1422729_42	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1422729_42	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-1422729_44	K10402	51.1	3.7e-16	KIF20; kinesin family member 20	N/A
PHROG	UHGV-1422729_44	phrog_5218	523.6	0	N/A	unknown function
UniRef90	UHGV-1422729_44	UniRef90_N9V933	1773.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1422729_44	908340.HMPREF9406_2570	1960.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-1422729_44	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1422729_44	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1422729_44	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_45	phrog_33	69.2	9.8e-20	distal tail protein Dit	tail
UniRef90	UHGV-1422729_45	UniRef90_A0A3E3AF06	256.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1422729_45	908340.HMPREF9406_2569	488.0	0	phage tail	N/A
NCBIFam	UHGV-1422729_45	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1422729_45	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1422729_45	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_46	phrog_1067	342.5	0	minor head protein	head and packaging
UniRef90	UHGV-1422729_46	UniRef90_G1VMN5	1243.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1422729_46	908340.HMPREF9406_2568	1273.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1422729_46	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1422729_46	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1422729_46	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1422729_46	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1422729_47	908340.HMPREF9406_2567	106.0	1.63e-27	N/A	N/A
UniRef90	UHGV-1422729_48	UniRef90_UPI001E4F503F	77.8	0.0000000000000204	collagen-like protein	N/A
eggNOG-mapper	UHGV-1422729_48	908340.HMPREF9406_2567	260.0	0	N/A	N/A
PHROG	UHGV-1422729_49	phrog_4492	123.0	2.1e-36	tail fiber protein	tail
UniRef90	UHGV-1422729_49	UniRef90_A0A0M2NIZ4	80.5	0.000000000000599	Microcystin dependent protein	N/A
eggNOG-mapper	UHGV-1422729_49	908340.HMPREF9406_2566	628.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1422729_49	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-1422729_50	phrog_24451	187.4	0	N/A	unknown function
UniRef90	UHGV-1422729_50	UniRef90_A0A3P6KYQ0	84.7	9.03e-19	N/A	N/A
eggNOG-mapper	UHGV-1422729_50	908340.HMPREF9406_2565	213.0	0	N/A	N/A
Pfam	UHGV-1422729_51	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1422729_51	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1422729_52	phrog_199	66.8	2.6e-19	holin	lysis
UniRef90	UHGV-1422729_52	UniRef90_N9WWD9	291.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-1422729_52	999413.HMPREF1094_01994	294.0	0	N/A	N/A
Pfam	UHGV-1422729_52	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1422729_52	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1422729_52	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1422729_53	K01448	55.9	6.3e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1422729_53	phrog_435	75.6	8.9e-22	endolysin	lysis
UniRef90	UHGV-1422729_53	UniRef90_UPI001E43C2E1	283.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1422729_53	908340.HMPREF9406_0809	279.0	0	pathogenesis	N/A
Pfam	UHGV-1422729_53	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1422729_53	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A