UHGV-1423373 (vOTU-157666)

Viral Genome: UHGV-1423373

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1423373
vOTU ID	vOTU-157666
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0178607
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.63 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.19
Jumbo phage	No

Genome content
Genome length (bp)	24,458
GC content	41.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	93%
Average CDS length (bps)	566.78
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1423373_1	phrog_5493	87.8	7.5e-26	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1423373_1	1410624.JNKK01000045_gene551	120.0	8.81e-27	Phage-related minor tail protein	N/A
COG	UHGV-1423373_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
UniRef90	UHGV-1423373_2	UniRef90_A0A285PT43	1971.0	0	Fibronectin type III	N/A
eggNOG-mapper	UHGV-1423373_2	1410624.JNKK01000045_gene550	509.0	0	Fibronectin type 3 domain	N/A
Pfam	UHGV-1423373_2	PF00041	N/A	N/A	Fibronectin type III domain	fn3
structural_annotation	UHGV-1423373_2	PF02010,PF06995,PF16794,PF16303,PF19271,MF_04116,NF010681,TIGR02126,COG3499,COG3401	N/A	N/A	N/A	N/A
PHROG	UHGV-1423373_3	phrog_1887	42.9	0.0000000000036	tail protein	tail
eggNOG-mapper	UHGV-1423373_3	1392487.JIAD01000001_gene511	320.0	0	N/A	N/A
structural_annotation	UHGV-1423373_3	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1423373_4	1410624.JNKK01000017_gene1988	98.2	2.35e-20	N/A	N/A
structural_annotation	UHGV-1423373_4	PF18614,MF_00216,NF003076,COG1585	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1423373_5	PF07041	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1423373_8	476272.RUMHYD_00002	129.0	1.2e-28	N/A	N/A
PHROG	UHGV-1423373_9	phrog_2310	44.5	0.0000000000015	N/A	unknown function
PHROG	UHGV-1423373_10	phrog_199	47.3	0.00000000000021	holin	lysis
UniRef90	UHGV-1423373_10	UniRef90_A0A285PUE3	214.0	0	Bacteriophage holin family	N/A
eggNOG-mapper	UHGV-1423373_10	394503.Ccel_2943	56.2	0.0000000281	toxin secretion phage lysis holin	N/A
Pfam	UHGV-1423373_10	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
COG	UHGV-1423373_10	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1423373_10	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
UniRef90	UHGV-1423373_11	UniRef90_A0A285PXT6	168.0	0	Winged helix-turn-helix DNA-binding domain	N/A
PHROG	UHGV-1423373_12	phrog_3754	94.1	1.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-1423373_12	476272.RUMHYD_01764	148.0	1.82169e-44	N/A	N/A
PHROG	UHGV-1423373_13	phrog_21718	71.2	1.4e-20	N/A	unknown function
UniRef90	UHGV-1423373_13	UniRef90_A0A285PT36	263.0	0	Consensus disorder prediction	N/A
eggNOG-mapper	UHGV-1423373_13	476272.RUMHYD_01768	63.9	0.000000000129	N/A	N/A
PHROG	UHGV-1423373_14	phrog_16490	146.7	1.20512e-43	N/A	unknown function
eggNOG-mapper	UHGV-1423373_14	476272.RUMHYD_01770	97.4	1.64e-21	N/A	N/A
PHROG	UHGV-1423373_15	phrog_20016	205.7	0	N/A	unknown function
UniRef90	UHGV-1423373_15	UniRef90_A0A285PT46	259.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1423373_15	1226322.HMPREF1545_00077	188.0	0	N/A	N/A
structural_annotation	UHGV-1423373_15	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1423373_16	476272.RUMHYD_01772	59.3	0.00000000471	N/A	N/A
structural_annotation	UHGV-1423373_16	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1423373_17	1226322.HMPREF1545_00079	51.2	0.000000834	N/A	N/A
KOfam	UHGV-1423373_18	K06400	254.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1423373_18	phrog_95	270.5	0	integrase	integration and excision
UniRef90	UHGV-1423373_18	UniRef90_A0A285PUJ0	797.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-1423373_18	1235792.C808_00048	304.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1423373_18	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1423373_18	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1423373_18	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1423373_18	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1423373_19	K22299	61.1	9.1e-33	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1423373_19	phrog_8	58.5	1.5e-29	transcriptional regulator	transcription regulation
UniRef90	UHGV-1423373_19	UniRef90_UPI001ADD7D85	304.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1423373_19	1121085.AUCI01000012_gene2784	67.0	0.000000000051	Transcriptional regulator	N/A
PADLOC	UHGV-1423373_19	retron_type_VI_hth_cluster2_1	41.2	2.2e-23	N/A	Retron
Pfam	UHGV-1423373_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
NCBIFam	UHGV-1423373_19	NF041951.1	N/A	N/A	RstR family transcriptional repressor	N/A
COG	UHGV-1423373_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1423373_19	PF01381,PF12643,MF_00535,NF041951,COG1476,COG1694	N/A	N/A	N/A	N/A
UniRef90	UHGV-1423373_20	UniRef90_A0A285PUG9	165.0	0	Cro/C1-type HTH DNA-binding domain	N/A
eggNOG-mapper	UHGV-1423373_20	1235790.C805_02349	73.2	3.87e-16	Transcriptional regulator	N/A
Pfam	UHGV-1423373_20	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1423373_20	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1423373_20	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1423373_23	phrog_806	90.9	1.4e-26	N/A	unknown function
UniRef90	UHGV-1423373_23	UniRef90_A0A285PTA3	310.0	0	N/A	N/A
eggNOG-mapper	UHGV-1423373_23	697329.Rumal_0454	130.0	7.49e-35	N/A	N/A
Pfam	UHGV-1423373_23	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-1423373_23	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-1423373_25	K22300	49.0	0.00000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1423373_25	phrog_2967	49.9	0.000000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-1423373_25	UniRef90_A0A1C6HZ25	157.0	0	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-1423373_25	748224.HMPREF9436_01444	119.0	9.06e-33	N/A	N/A
Pfam	UHGV-1423373_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1423373_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1423373_25	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1423373_28	K07741	196.2	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1423373_28	phrog_63	162.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1423373_28	UniRef90_UPI001ADD788B	393.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1423373_28	658655.HMPREF0988_02592	298.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1423373_28	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1423373_28	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1423373_28	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1423373_28	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-1423373_30	phrog_4707	80.7	1.9e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423373_30	UniRef90_UPI0011C364A6	146.0	2.82e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1423373_30	545696.HOLDEFILI_01135	129.0	6.82e-33	N/A	N/A
COG	UHGV-1423373_30	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1423373_30	NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1423373_31	phrog_9804	117.2	1.3e-34	N/A	unknown function
UniRef90	UHGV-1423373_31	UniRef90_A0A285PUF9	434.0	0	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-1423373_31	1121344.JHZO01000003_gene981	100.0	1.77e-23	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1423373_31	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1423373_31	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1423373_34	phrog_253	95.7	4.8e-28	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423373_34	UniRef90_A0A285PT93	194.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1423373_34	411470.RUMGNA_02192	125.0	1.53e-34	Siphovirus Gp157	N/A
Pfam	UHGV-1423373_34	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1423373_34	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1423373_35	phrog_155	134.9	4.9e-40	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423373_35	UniRef90_UPI001ADDDE31	346.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1423373_35	1462527.CCDM010000010_gene489	146.0	1.32997e-41	ERF superfamily	N/A
Pfam	UHGV-1423373_35	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1423373_35	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1423373_36	phrog_72	59.7	4.3e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423373_36	UniRef90_A0A285PU94	342.0	0	Recombinase NinB	N/A
eggNOG-mapper	UHGV-1423373_36	411468.CLOSCI_00314	132.0	1.62e-36	N/A	N/A
structural_annotation	UHGV-1423373_36	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1423373_37	phrog_7964	289.2	0	N/A	unknown function
UniRef90	UHGV-1423373_37	UniRef90_A0A285PUH1	189.0	0	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-1423373_37	411470.RUMGNA_02189	98.2	5.16e-22	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1423373_37	PF04519	N/A	N/A	Polymer-forming cytoskeletal	Bactofilin
Pfam	UHGV-1423373_37	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1423373_37	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1423373_37	MF_01691,NF040481,COG2171	N/A	N/A	N/A	N/A
PHROG	UHGV-1423373_38	phrog_7566	107.3	6.2e-32	N/A	unknown function
UniRef90	UHGV-1423373_38	UniRef90_A0A371ATG2	96.7	3.6e-24	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1423373_38	1304866.K413DRAFT_1198	103.0	1.61e-27	N/A	N/A
PHROG	UHGV-1423373_39	phrog_190	111.4	7.2e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423373_39	UniRef90_UPI001ADD7D79	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-1423373_39	180504.Q8W6N9_9CAUD	104.0	1.36e-27	N/A	N/A
Pfam	UHGV-1423373_39	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1423373_39	PF06356	N/A	N/A	N/A	N/A