UHGV-1424169 (vOTU-110482)

Viral Genome: UHGV-1424169

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1424169
vOTU ID	vOTU-110482
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0169943
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.89 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.69
Jumbo phage	No

Genome content
Genome length (bp)	23,193
GC content	54.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	88%
Average CDS length (bps)	509.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1424169_1	phrog_10469	80.4	1.9e-23	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424169_1	UniRef90_A0A1C5MBN1	105.0	4.89e-24	N/A	N/A
eggNOG-mapper	UHGV-1424169_1	742740.HMPREF9474_03492	97.4	7.57e-22	DnaD domain protein	N/A
Pfam	UHGV-1424169_1	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1424169_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1424169_2	K01160	55.7	0.0000000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1424169_2	phrog_140	136.9	9.40005e-41	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424169_2	UniRef90_L1Q8K9	136.0	1.09e-38	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1424169_2	545697.HMPREF0216_02819	136.0	1.82e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1424169_2	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1424169_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1424169_2	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1424169_3	K03111	121.8	8.8e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1424169_3	phrog_44	127.9	7.4e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424169_3	UniRef90_A0A3D2HZK1	158.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1424169_3	693746.OBV_19910	156.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1424169_3	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1424169_3	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1424169_3	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1424169_3	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1424169_3	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1424169_4	K07455	291.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1424169_4	phrog_148	270.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424169_4	UniRef90_U2SBP2	377.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-1424169_4	1226322.HMPREF1545_00015	377.0	0	RecT family	N/A
Pfam	UHGV-1424169_4	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1424169_4	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1424169_4	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1424169_4	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1424169_5	phrog_434	323.9	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424169_5	UniRef90_A0A3D3XZF3	287.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1424169_5	428125.CLOLEP_01823	272.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1424169_5	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1424169_5	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1424169_5	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1424169_5	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1424169_7	1121091.AUMP01000032_gene3076	45.4	0.00000573	N/A	N/A
KOfam	UHGV-1424169_9	K07699	110.6	1.5e-32	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-1424169_9	phrog_37855	76.5	2.7e-22	N/A	unknown function
UniRef90	UHGV-1424169_9	UniRef90_UPI0017495239	107.0	1.29e-25	sporulation transcription factor Spo0A	N/A
eggNOG-mapper	UHGV-1424169_9	657322.FPR_24320	94.7	1.1e-21	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	N/A
Pfam	UHGV-1424169_9	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-1424169_9	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
KOfam	UHGV-1424169_15	K22300	55.1	0.0000000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1424169_15	phrog_8	41.3	0.000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-1424169_15	UniRef90_A0A1Y4L0A2	120.0	8.27e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1424169_15	411471.SUBVAR_05818	93.2	9.68e-23	sequence-specific DNA binding	N/A
Pfam	UHGV-1424169_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1424169_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1424169_15	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424169_19	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1424169_20	K06400	386.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1424169_20	phrog_95	375.7	0	integrase	integration and excision
UniRef90	UHGV-1424169_20	UniRef90_UPI00164E9A6A	483.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1424169_20	663278.Ethha_0939	339.0	0	N/A	N/A
Pfam	UHGV-1424169_20	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1424169_20	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1424169_20	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1424169_20	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1424169_20	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1424169_21	phrog_3972	78.4	3.7e-23	N/A	unknown function
UniRef90	UHGV-1424169_21	UniRef90_D3H760	87.0	4.08e-20	Prophage Pi3 protein	N/A
eggNOG-mapper	UHGV-1424169_21	1158612.I580_01895	107.0	3.76e-29	N/A	N/A
dbAPIS	UHGV-1424169_21	APIS035	N/A	N/A	Broad-spectrum counter-defense.	N/A
eggNOG-mapper	UHGV-1424169_22	1232436.CAPF01000086_gene851	60.5	0.0000000217	N/A	N/A
eggNOG-mapper	UHGV-1424169_24	1235798.C817_04600	60.1	0.000000000423	N/A	N/A
structural_annotation	UHGV-1424169_24	NF040522,COG2944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424169_26	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1424169_27	phrog_16490	58.0	2e-16	N/A	unknown function
PHROG	UHGV-1424169_28	phrog_22984	40.3	0.000000000053	N/A	unknown function
structural_annotation	UHGV-1424169_30	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1424169_31	phrog_881	86.0	2.2e-25	holin	lysis
UniRef90	UHGV-1424169_31	UniRef90_A0A4Q7P349	110.0	1.36e-30	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-1424169_31	742740.HMPREF9474_02251	110.0	4.98e-31	Putative phage holin Dp-1	N/A
Pfam	UHGV-1424169_31	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1424169_31	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1424169_32	phrog_4105	96.9	1.2e-28	N/A	unknown function
UniRef90	UHGV-1424169_32	UniRef90_A0A8D9UHA9	129.0	4.29e-37	Holin protein	N/A
eggNOG-mapper	UHGV-1424169_32	742733.HMPREF9469_05011	132.0	5.06e-39	N/A	N/A
PHROG	UHGV-1424169_34	phrog_35892	61.3	4.2e-25	N/A	unknown function
Pfam	UHGV-1424169_34	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-1424169_34	PF13855	N/A	N/A	Leucine rich repeat	LRR_8
NCBIFam	UHGV-1424169_34	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
structural_annotation	UHGV-1424169_34	PF13306	N/A	N/A	N/A	N/A
KOfam	UHGV-1424169_36	K07273	200.6	0	acm; lysozyme	N/A
PHROG	UHGV-1424169_36	phrog_291	147.3	1.20512e-43	endolysin	lysis
UniRef90	UHGV-1424169_36	UniRef90_A0A416S3Y6	244.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1424169_36	1232453.BAIF02000060_gene1728	223.0	0	Glycosyl hydrolase, family 25	N/A
Pfam	UHGV-1424169_36	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1424169_36	PF01476	N/A	N/A	LysM domain	LysM
Pfam	UHGV-1424169_36	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1424169_36	COG0737	N/A	N/A	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	N/A
structural_annotation	UHGV-1424169_36	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-1424169_37	phrog_372	199.6	0	tail protein	tail
UniRef90	UHGV-1424169_37	UniRef90_UPI001373A0FD	161.0	5.46e-39	N/A	N/A
eggNOG-mapper	UHGV-1424169_37	1235802.C823_05263	156.0	7.9e-38	N/A	N/A
Pfam	UHGV-1424169_37	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1424169_37	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1424169_37	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1424169_38	phrog_18190	110.9	3e-35	N/A	unknown function
UniRef90	UHGV-1424169_38	UniRef90_A0A416L7Z5	81.6	0.00000000000113	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1424169_38	411471.SUBVAR_06932	234.0	0	N/A	N/A
structural_annotation	UHGV-1424169_38	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1424169_39	phrog_1194	56.8	3.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1424169_39	445972.ANACOL_01864	55.1	0.0000000609	N/A	N/A
structural_annotation	UHGV-1424169_39	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1424169_40	428127.EUBDOL_01563	72.4	0.000000000344	homoserine transmembrane transporter activity	N/A
COG	UHGV-1424169_40	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A