UHGV-1425542 (vOTU-034838)

Viral Genome: UHGV-1425542

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1425542
vOTU ID	vOTU-034838
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0158431
Associated BioSample	SAMN05414977
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.65 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.29
Jumbo phage	No

Genome content
Genome length (bp)	21,611
GC content	43.51%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	34
CDS density	94%
Average CDS length (bps)	597.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1425542_2	471875.RUMLAC_02311	51.2	0.000000995	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1425542_2	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
UniRef90	UHGV-1425542_3	UniRef90_A0A350XYL2	193.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1425542_3	272558.10176295	56.2	0.0000011	NlpC/P60 family	N/A
Pfam	UHGV-1425542_3	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1425542_3	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
UniRef90	UHGV-1425542_4	UniRef90_A0A7C7EVC4	78.6	1.38e-16	MurNAc-LAA domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1425542_4	697281.Mahau_0053	50.1	0.00000609	n-acetylmuramoyl-l-alanine amidase	N/A
COG	UHGV-1425542_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-1425542_5	phrog_263	73.5	2.1e-21	holin	lysis
UniRef90	UHGV-1425542_5	UniRef90_A0A355KVP4	159.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-1425542_5	445971.ANASTE_00091	57.0	0.00000000269	SPP1 phage holin	N/A
Pfam	UHGV-1425542_5	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-1425542_5	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-1425542_5	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_6	phrog_937	40.6	0.000000000046	hemolysin	other
PHROG	UHGV-1425542_12	phrog_1067	307.3	0	minor head protein	head and packaging
UniRef90	UHGV-1425542_12	UniRef90_R6GLF8	306.0	0	Phage minor structural protein region	N/A
eggNOG-mapper	UHGV-1425542_12	1160721.RBI_I01574	304.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1425542_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1425542_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1425542_12	COG4926	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-1425542_13	UniRef90_A0A224AT67	91.7	1.53e-18	Phage tail component	N/A
eggNOG-mapper	UHGV-1425542_13	1160721.RBI_I01575	124.0	6.2e-32	Phage tail protein	N/A
COG	UHGV-1425542_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1425542_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1425542_14	K10398	41.1	0.0000000000083	KIF11, EG5; kinesin family member 11	N/A
PHROG	UHGV-1425542_14	phrog_6900	259.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1425542_14	UniRef90_A0A373CK98	313.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-1425542_14	411470.RUMGNA_02076	313.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1425542_14	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1425542_14	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1425542_15	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_16	phrog_88	88.7	6.7e-26	major tail protein	tail
UniRef90	UHGV-1425542_16	UniRef90_UPI000BA43BBF	103.0	4.41e-24	major tail protein	N/A
eggNOG-mapper	UHGV-1425542_16	1121428.DESHY_10070___1	89.7	2.05e-19	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1425542_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
eggNOG-mapper	UHGV-1425542_17	573061.Clocel_3971	48.9	0.0000084	High confidence in function and specificity	N/A
structural_annotation	UHGV-1425542_17	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1425542_18	UniRef90_A0A174CK72	88.6	1.1e-19	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1425542_18	97139.C824_05967	85.5	2.25e-19	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-1425542_18	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_19	phrog_1951	61.7	9.9e-18	head-tail adaptor	connector
COG	UHGV-1425542_19	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1425542_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_20	phrog_5223	69.7	2.9e-20	neck protein	connector
UniRef90	UHGV-1425542_20	UniRef90_A0A1J9V7A2	60.8	0.000000000466	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1425542_20	318464.IO99_13745	61.2	0.0000000000595	N/A	N/A
structural_annotation	UHGV-1425542_20	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_21	phrog_10	59.3	3.8e-17	major head protein	head and packaging
UniRef90	UHGV-1425542_21	UniRef90_A0A1C5W5F9	352.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-1425542_21	742740.HMPREF9474_04304	381.0	0	Phage capsid family	N/A
Pfam	UHGV-1425542_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1425542_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1425542_21	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1425542_22	K06904	75.8	7.5e-22	N/A	N/A
PHROG	UHGV-1425542_22	phrog_80	91.0	2.1e-26	head maturation protease	head and packaging
UniRef90	UHGV-1425542_22	UniRef90_A0A2V2GKJ3	244.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1425542_22	1321814.HMPREF9089_00929	192.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1425542_22	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-1425542_22	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1425542_22	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_23	phrog_12	104.4	8.3e-31	portal protein	head and packaging
UniRef90	UHGV-1425542_23	UniRef90_A0A2V2GK98	494.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1425542_23	742740.HMPREF9474_04306	365.0	0	Phage portal protein	N/A
Pfam	UHGV-1425542_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1425542_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1425542_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_24	phrog_9	337.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1425542_24	UniRef90_C9LCN6	803.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1425542_24	411470.RUMGNA_02062	803.0	0	N/A	N/A
Pfam	UHGV-1425542_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1425542_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1425542_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1425542_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_25	phrog_1066	98.6	4.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1425542_25	397290.C810_00417	135.0	8.41e-40	N/A	N/A
structural_annotation	UHGV-1425542_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
UniRef90	UHGV-1425542_26	UniRef90_A0A350U006	92.4	2.86e-22	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1425542_26	1203606.HMPREF1526_01332	92.0	6.27e-23	HNH nucleases	N/A
COG	UHGV-1425542_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1425542_27	PF09055	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_28	phrog_11237	63.9	2.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1425542_28	1235798.C817_02584	56.2	0.0000000353	N/A	N/A
PHROG	UHGV-1425542_29	phrog_824	124.7	4.3e-37	N/A	unknown function
UniRef90	UHGV-1425542_29	UniRef90_R6DT92	252.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1425542_29	1414720.CBYM010000002_gene588	119.0	5.29e-33	VRR-NUC domain	N/A
Pfam	UHGV-1425542_29	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1425542_29	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_30	phrog_3584	168.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1425542_30	561177.ANHYDRO_01389	109.0	9.8e-26	N/A	N/A
structural_annotation	UHGV-1425542_30	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-1425542_31	phrog_478	114.8	4.2e-34	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1425542_31	UniRef90_R6E548	253.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-1425542_31	1111121.HMPREF1247_0834	107.0	2.75e-28	N/A	N/A
Pfam	UHGV-1425542_33	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev