UHGV-1425617 (vOTU-115329)

Viral Genome: UHGV-1425617

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1425617
vOTU ID	vOTU-115329
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-4395998
Associated BioSample	SAMN03922522
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.8 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.68
Jumbo phage	No

Genome content
Genome length (bp)	27,322
GC content	54.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	25
CDS density	94%
Average CDS length (bps)	1,026.12
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1425617_1	K19077	338.2	0	graS; two-component system, OmpR family, sensor histidine kinase GraS [EC:2.7.13.3]	N/A
PHROG	UHGV-1425617_1	phrog_857	97.1	1.8e-28	N/A	unknown function
UniRef90	UHGV-1425617_1	UniRef90_A0A174LTL7	617.0	0	Sensor histidine kinase graS	N/A
eggNOG-mapper	UHGV-1425617_1	428125.CLOLEP_03437	666.0	0	COG0642 Signal transduction histidine kinase	N/A
Pfam	UHGV-1425617_1	PF02518	N/A	N/A	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
COG	UHGV-1425617_1	COG0642	N/A	N/A	Signal transduction histidine kinase	N/A
eggNOG-mapper	UHGV-1425617_2	428125.CLOLEP_00341	325.0	0	N/A	N/A
KOfam	UHGV-1425617_3	K24073	46.5	0.0000000000006	cnrH; RNA polymerase sigma factor CnrH	N/A
UniRef90	UHGV-1425617_3	UniRef90_A7VP63	288.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1425617_3	428125.CLOLEP_00339	288.0	0	RNA polymerase sigma-70 factor, ECF subfamily K00960	N/A
Pfam	UHGV-1425617_3	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-1425617_3	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1425617_3	PF08281,MF_00245,TIGR02937,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_4	phrog_20245	75.4	5e-22	N/A	unknown function
UniRef90	UHGV-1425617_4	UniRef90_A7VP62	166.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1425617_4	428125.CLOLEP_00338	166.0	0	COG NOG21981 non supervised orthologous group	N/A
Pfam	UHGV-1425617_4	PF12645	N/A	N/A	Helix-turn-helix domain	HTH_16
structural_annotation	UHGV-1425617_4	PF12645	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_5	phrog_16129	94.6	4.7e-28	excisionase	integration and excision
UniRef90	UHGV-1425617_5	UniRef90_A7VP61	139.0	8.37976e-42	Excisionase	N/A
eggNOG-mapper	UHGV-1425617_5	428125.CLOLEP_00337	139.0	1.40971e-42	Excisionase from transposon Tn916	N/A
Pfam	UHGV-1425617_5	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
structural_annotation	UHGV-1425617_5	PF09035,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1425617_6	K14059	202.0	0	int; integrase	N/A
PHROG	UHGV-1425617_6	phrog_1	204.7	0	integrase	integration and excision
UniRef90	UHGV-1425617_6	UniRef90_A0A1C6L1R0	789.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1425617_6	428125.CLOLEP_00336	791.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1425617_6	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-1425617_6	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1425617_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1425617_6	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1425617_6	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_7	phrog_5057	95.4	6e-28	N/A	unknown function
PHROG	UHGV-1425617_8	phrog_2412	51.7	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1425617_8	1232449.BAHV02000018_gene1532	69.7	0.00000000000057	N/A	N/A
KOfam	UHGV-1425617_9	K06909	141.2	9.00054e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1425617_9	phrog_2	174.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1425617_9	UniRef90_A0A1H7MRC6	577.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1425617_9	693746.OBV_18030	508.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1425617_9	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1425617_9	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1425617_9	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1425617_9	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_10	phrog_533	266.6	0	portal protein	head and packaging
UniRef90	UHGV-1425617_10	UniRef90_A0A1H7MQM5	592.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1425617_10	476272.RUMHYD_01758	422.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1425617_10	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_11	phrog_581	232.6	0	minor head protein	head and packaging
UniRef90	UHGV-1425617_11	UniRef90_A0A3D4T830	479.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1425617_11	33035.JPJF01000106_gene3134	338.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1425617_11	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1425617_11	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1425617_11	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_12	phrog_194	65.4	1.1e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-1425617_12	UniRef90_A0A1H7MPG5	209.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1425617_12	1235790.C805_00072	103.0	1.16e-24	Phage minor structural protein GP20	N/A
Pfam	UHGV-1425617_12	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1425617_12	PF06810	N/A	N/A	N/A	N/A
UniRef90	UHGV-1425617_13	UniRef90_A0A0M2NI16	299.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-1425617_13	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_15	phrog_541	94.1	9.9e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-1425617_15	476272.RUMHYD_01778	117.0	1.81e-31	N/A	N/A
PHROG	UHGV-1425617_16	phrog_3366	67.5	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1425617_16	476272.RUMHYD_01779	89.4	1.7e-20	N/A	N/A
structural_annotation	UHGV-1425617_16	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_17	phrog_556	72.0	6.8e-21	minor head protein	head and packaging
UniRef90	UHGV-1425617_17	UniRef90_A0A1H7MNM8	147.0	1.74041e-42	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1425617_17	476272.RUMHYD_01780	94.7	1.12e-22	N/A	N/A
Pfam	UHGV-1425617_17	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1425617_17	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_18	phrog_3266	78.4	7.1e-23	tail completion	connector
eggNOG-mapper	UHGV-1425617_18	476272.RUMHYD_01781	162.0	0	N/A	N/A
structural_annotation	UHGV-1425617_18	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_19	phrog_3099	123.5	1.4e-36	N/A	unknown function
eggNOG-mapper	UHGV-1425617_19	33035.JPJF01000106_gene3126	194.0	0	N/A	N/A
structural_annotation	UHGV-1425617_19	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_20	phrog_11299	98.4	7.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-1425617_20	411459.RUMOBE_01382	65.9	0.000000000018	N/A	N/A
PHROG	UHGV-1425617_21	phrog_706	129.7	1.9e-38	N/A	unknown function
UniRef90	UHGV-1425617_21	UniRef90_A0A1H7MNA7	220.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1425617_21	411902.CLOBOL_00127	189.0	0	N/A	N/A
Pfam	UHGV-1425617_21	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1425617_21	PF06854	N/A	N/A	N/A	N/A
KOfam	UHGV-1425617_22	K06240	40.6	0.0000000000018	LAMA3_5; laminin, alpha 3/5	N/A
PHROG	UHGV-1425617_22	phrog_1535	234.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1425617_22	UniRef90_A0A1H7MQ92	123.0	1.81e-24	Phage-related protein	N/A
eggNOG-mapper	UHGV-1425617_22	1280692.AUJL01000027_gene2150	99.4	4.7e-18	phage tail tape measure protein	N/A
COG	UHGV-1425617_22	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_23	phrog_1194	60.7	2.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1425617_23	1158612.I580_01922	60.5	0.000000000531	N/A	N/A
structural_annotation	UHGV-1425617_23	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1425617_24	phrog_6616	78.8	2.7e-23	tail protein	tail
eggNOG-mapper	UHGV-1425617_24	1232443.BAIA02000078_gene16	94.4	5.72e-19	N/A	N/A
Pfam	UHGV-1425617_24	PF04102	N/A	N/A	SlyX	SlyX
PHROG	UHGV-1425617_25	phrog_24896	180.7	0	N/A	unknown function
UniRef90	UHGV-1425617_25	UniRef90_A0A416KIC2	1008.0	0	N/A	N/A
eggNOG-mapper	UHGV-1425617_25	657322.FPR_22010	1001.0	0	N/A	N/A
Pfam	UHGV-1425617_25	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1425617_25	PF19789,PF08757,PF13385,PF02010,MF_04116,NF011735,NF033188,COG3121	N/A	N/A	N/A	N/A